Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.6e-71 272.7 144 100.0
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.5e-53 213.0 143 72.7
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 6.0e-50 201.1 138 72.5
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.7e-49 199.5 141 70.9
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 3.1e-46 188.7 137 67.9
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.7e-44 183.0 142 59.9
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.7e-44 183.0 142 59.9
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.7e-44 183.0 142 59.9
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.9e-44 182.2 137 61.3
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.1e-43 180.3 142 60.6
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.1e-43 180.3 142 58.5
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.9e-43 179.5 142 60.6
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 3.2e-43 178.7 137 59.9
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 9.2e-43 177.2 142 59.2
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.2e-42 176.8 142 59.2
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 1.6e-42 176.4 136 61.0
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.6e-42 176.4 142 58.5
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.1e-42 176.0 142 59.9
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.7e-42 175.6 137 59.9
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 2.7e-42 175.6 140 58.6
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 4.6e-42 174.9 140 59.3
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 4.6e-42 174.9 142 58.5
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 4.6e-42 174.9 140 57.9
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 4.6e-42 174.9 137 61.3
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 6.0e-42 174.5 137 59.9
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 6.0e-42 174.5 137 59.9
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 7.8e-42 174.1 140 59.3
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 7.8e-42 174.1 140 59.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.0e-41 173.7 140 59.3
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.0e-41 173.7 140 59.3
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.0e-41 173.7 140 59.3
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.0e-41 173.7 139 59.7
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.3e-41 173.3 140 58.6
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.3e-41 173.3 142 57.7
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 1.7e-41 172.9 140 58.6
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.7e-41 172.9 140 59.3
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 1.7e-41 172.9 140 58.6
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.7e-41 172.9 137 58.4
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.3e-41 172.6 137 59.1
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 2.3e-41 172.6 140 59.3
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 2.3e-41 172.6 140 59.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-41 172.6 137 60.6
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 2.3e-41 172.6 137 60.6
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.3e-41 172.6 137 57.7
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 3.0e-41 172.2 142 58.5
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 3.9e-41 171.8 142 57.0
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 3.9e-41 171.8 137 59.9
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.9e-41 171.8 137 58.4
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.9e-41 171.8 136 60.3
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.9e-41 171.8 142 57.7
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 3.9e-41 171.8 136 61.0
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 3.9e-41 171.8 144 55.6
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 5.0e-41 171.4 142 57.0
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.6e-41 171.0 140 57.9
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 6.6e-41 171.0 140 57.9
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 8.6e-41 170.6 142 57.0
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-40 170.2 137 58.4
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.1e-40 170.2 137 56.9
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.1e-40 170.2 141 58.9
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.1e-40 170.2 137 58.4
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.5e-40 169.9 140 56.4
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.5e-40 169.9 137 57.7
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.9e-40 169.5 139 57.6
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.9e-40 169.5 137 57.7
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.9e-40 169.5 140 58.6
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.5e-40 169.1 139 56.8
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.5e-40 169.1 139 56.8
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 2.5e-40 169.1 139 56.8
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.5e-40 169.1 140 57.1
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.3e-40 168.7 142 59.2
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 3.3e-40 168.7 140 56.4
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 3.3e-40 168.7 141 57.4
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.3e-40 168.7 142 59.2
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 3.3e-40 168.7 137 55.5
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 3.3e-40 168.7 136 60.3
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.3e-40 168.3 137 56.9
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 5.6e-40 167.9 141 57.4
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 5.6e-40 167.9 137 59.1
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 7.3e-40 167.5 142 55.6
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 7.3e-40 167.5 142 55.6
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 7.3e-40 167.5 139 55.4
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 9.5e-40 167.2 135 60.0
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 9.5e-40 167.2 140 57.1
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 9.5e-40 167.2 136 55.9
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.2e-39 166.8 140 57.9
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 1.2e-39 166.8 138 56.5
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.6e-39 166.4 135 58.5
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.6e-39 166.4 136 55.9
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.6e-39 166.4 135 60.0
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.1e-39 166.0 137 57.7
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-39 166.0 137 56.9
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 3.6e-39 165.2 150 54.7
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 8.1e-39 164.1 141 56.0
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.1e-38 163.7 146 54.1
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.4e-38 163.3 139 55.4
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 2.3e-38 162.5 141 55.3
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 3.1e-38 162.2 141 56.0
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 3.1e-38 162.2 141 56.0
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 3.1e-38 162.2 141 56.0
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 5.2e-38 161.4 141 55.3
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.2e-37 160.2 115 65.2
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.2e-37 160.2 134 59.0
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.5e-37 159.8 174 47.1
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-37 159.5 137 55.5
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 2.0e-37 159.5 141 54.6
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.8e-37 157.9 137 55.5
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.7e-36 156.4 118 63.6
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-36 155.2 115 65.2
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-36 155.2 115 65.2
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 4.9e-36 154.8 114 64.0
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 6.4e-36 154.5 116 62.1
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-35 153.7 137 54.7
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-35 153.7 115 64.3
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.1e-35 153.7 114 63.2
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-35 153.3 115 64.3
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.4e-35 152.5 115 60.9
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 3.2e-35 152.1 115 61.7
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 4.1e-35 151.8 116 63.8
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 5.4e-35 151.4 121 58.7
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 9.2e-35 150.6 115 63.5
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.2e-34 150.2 134 56.0
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.2e-34 150.2 181 43.6
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-34 149.8 115 62.6
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.6e-34 149.8 118 56.8
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 2.1e-34 149.4 115 62.6
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.7e-34 149.1 115 58.3
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 3.5e-34 148.7 126 55.6
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 4.6e-34 148.3 154 48.7
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 4.6e-34 148.3 181 43.1
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 7.8e-34 147.5 115 59.1
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 7.8e-34 147.5 131 57.3
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-32 143.7 114 60.5
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.8e-31 139.0 142 47.9
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 4.7e-31 138.3 135 49.6
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.1e-31 137.5 108 58.3
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.1e-31 137.5 108 58.3
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 6.8e-30 134.4 82 76.8
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.7e-28 129.8 137 43.1
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.7e-28 129.8 174 40.2
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 7.1e-27 124.4 158 43.7
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 7.8e-26 120.9 88 65.9
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.1e-25 118.2 94 60.6
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 8.1e-23 110.9 87 60.9
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 3.4e-21 105.5 90 62.2
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 4.9e-20 101.7 133 39.1
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 2.1e-18 96.3 134 35.8
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 3.5e-18 95.5 136 40.4
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 6.0e-18 94.7 76 55.3
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.3e-17 93.6 69 62.3
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 3.0e-17 92.4 94 47.9
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 6.6e-17 91.3 71 63.4
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 6.6e-17 91.3 71 63.4
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 4.3e-16 88.6 71 60.6
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.4e-14 83.6 63 61.9
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 9.0e-14 80.9 57 61.4
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.2e-13 80.5 57 61.4
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 4.5e-13 78.6 65 60.0
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.9e-12 75.1 56 58.9
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 9.6e-08 60.8 63 49.2
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 1.6e-07 60.1 47 51.1
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 6.2e-07 58.2 63 47.6
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.1e-06 57.4 51 47.1
Pp3c17_13260 Physcomitrium patens HOM05D004221 ORTHO05D004998 4.0e-06 55.5 52 61.5
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 6.9e-06 54.7 54 46.3


User provided reference genes

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