Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO114G0025 Selaginella moellendorffii HOM05D000108 ORTHO05D374881 4.5e-86 321.2 164 100.0
SMO117G0033 Selaginella moellendorffii HOM05D000108 ORTHO05D006029 2.8e-35 152.5 203 49.3
CBR_g55234 Chara braunii HOM05D000108 ORTHO05D006029 2.8e-19 99.4 206 35.4
AagrBONN_evm.TU.Sc2ySwM_344.3357 Anthoceros agrestis HOM05D000108 ORTHO05D006029 2.6e-17 92.8 208 34.6
Ciclev10000365m.g Citrus clementina HOM05D000273 ORTHO05D000198 3.4e-17 92.4 133 42.9
AT3G63480 Arabidopsis thaliana HOM05D000108 ORTHO05D006029 2.4e-15 86.3 193 33.2
Nn4g26164 Nelumbo nucifera HOM05D000108 ORTHO05D006029 2.4e-15 86.3 190 34.2
Lj9A682T48 Lonicera japonica HOM05D000108 ORTHO05D006029 3.2e-15 85.9 192 33.9
Sabra05G0037700 Salix brachista HOM05D000108 ORTHO05D006029 4.2e-15 85.5 182 31.9
AL5G46340 Arabidopsis lyrata HOM05D000108 ORTHO05D006029 5.4e-15 85.1 193 33.2
TWI56G0698 Tripterygium wilfordii HOM05D000108 ORTHO05D006029 5.4e-15 85.1 192 34.4
GSVIVG01000008001 Vitis vinifera HOM05D000108 ORTHO05D006029 5.4e-15 85.1 192 33.9
Sp1g24030 Schrenkiella parvula HOM05D000108 ORTHO05D006029 7.1e-15 84.7 193 32.6
Gohir.D11G273200 Gossypium hirsutum HOM05D000108 ORTHO05D006029 9.2e-15 84.3 182 33.5
Solyc01g098670.3 Solanum lycopersicum HOM05D000108 ORTHO05D006029 9.2e-15 84.3 181 34.3
EL10Ac4g09307 Beta vulgaris HOM05D000108 ORTHO05D006029 1.6e-14 83.6 179 34.1
MD12G1223800 Malus domestica HOM05D000108 ORTHO05D006029 1.6e-14 83.6 192 33.3
Ah.06g190120 Amaranthus hybridus HOM05D000273 ORTHO05D006029 2.1e-14 83.2 191 36.1
Carub.0005s3009 Capsella rubella HOM05D000108 ORTHO05D006029 3.5e-14 82.4 192 33.3
Duzib128G2000 Durio zibethinus HOM05D000108 ORTHO05D006029 3.5e-14 82.4 192 33.9
CARHR291490 Cardamine hirsuta HOM05D000108 ORTHO05D006029 4.6e-14 82.0 192 33.9
Cpa.g.sc48.12 Carica papaya HOM05D000108 ORTHO05D006029 4.6e-14 82.0 192 32.8
Thhalv10005951m.g Eutrema salsugineum HOM05D000108 ORTHO05D006029 4.6e-14 82.0 193 33.2
MBI05_g40560_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D006029 6.0e-14 81.6 170 34.1
ECA246G1564 Erigeron canadensis HOM05D000108 ORTHO05D006029 7.8e-14 81.3 192 31.8
Aa31LG10G17350 Aethionema arabicum HOM05D000108 ORTHO05D006029 1.0e-13 80.9 208 31.7
Potri.005G038900 Populus trichocarpa HOM05D000108 ORTHO05D006029 1.0e-13 80.9 192 31.2
QL03p004313 Quercus lobata HOM05D000108 ORTHO05D006029 1.0e-13 80.9 191 31.4
Lj1g0019134 Lotus japonicus HOM05D000108 ORTHO05D006029 1.3e-13 80.5 192 32.3
SMO117G0299 Selaginella moellendorffii HOM05D000108 ORTHO05D375668 1.3e-13 80.5 200 38.5
AUR62000867 Chenopodium quinoa HOM05D000108 ORTHO05D006029 1.7e-13 80.1 192 33.9
PSO210G1121 Papaver somniferum HOM05D000108 ORTHO05D006029 1.7e-13 80.1 192 30.7
Sopen01g042210 Solanum pennellii HOM05D000108 ORTHO05D006029 1.7e-13 80.1 192 32.3
CSS0038768 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D006029 2.3e-13 79.7 192 33.3
CSS0044833 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D006029 2.3e-13 79.7 192 33.3
Nitab4.5_0004940g0140 Nicotiana tabacum HOM05D000108 ORTHO05D006029 2.3e-13 79.7 192 31.8
RcHm_v2.0_Chr3g0454101 Rosa chinensis HOM05D000108 ORTHO05D006029 2.3e-13 79.7 192 33.3
THA.LOC104823031 Tarenaya hassleriana HOM05D000108 ORTHO05D006029 3.0e-13 79.3 193 32.1
CsaV3_1G045180 Cucumis sativus L. HOM05D000108 ORTHO05D006029 3.9e-13 79.0 194 31.4
FAN02G0002 Fragaria x ananassa HOM05D000108 ORTHO05D006029 3.9e-13 79.0 192 31.8
Thecc.05G308300 Theobroma cacao HOM05D000108 ORTHO05D006029 3.9e-13 79.0 192 32.3
Prupe.6G330200 Prunus persica HOM05D000108 ORTHO05D006029 5.1e-13 78.6 192 32.3
FvH4_6g05340 Fragaria vesca HOM05D000108 ORTHO05D006029 6.6e-13 78.2 192 31.2
FAN05G0886 Fragaria x ananassa HOM05D000108 ORTHO05D006029 6.6e-13 78.2 199 32.2
FAN14G1533 Fragaria x ananassa HOM05D000108 ORTHO05D006029 6.6e-13 78.2 192 31.2
FAN14G3015 Fragaria x ananassa HOM05D000108 ORTHO05D006029 6.6e-13 78.2 192 31.2
Pp3c14_15480 Physcomitrium patens HOM05D000108 ORTHO05D006029 6.6e-13 78.2 50 74.0
MELO3C010147.2 Cucumis melo HOM05D000108 ORTHO05D006029 8.7e-13 77.8 193 31.6
DCAR_003313 Daucus carota HOM05D000108 ORTHO05D006029 8.7e-13 77.8 192 30.7
PSO407G0355 Papaver somniferum HOM05D000108 ORTHO05D006029 8.7e-13 77.8 201 30.8
Rhsim05G0144600 Rhododendron simsii HOM05D000108 ORTHO05D006029 8.7e-13 77.8 191 31.9
FAN05G0788 Fragaria x ananassa HOM05D000108 ORTHO05D006029 1.1e-12 77.4 192 31.2
FAN09G1914 Fragaria x ananassa HOM05D000273 ORTHO05D006029 1.1e-12 77.4 192 30.2
Gorai.007G294600 Gossypium raimondii HOM05D000108 ORTHO05D006029 1.1e-12 77.4 192 31.8
PSO170G2040 Papaver somniferum HOM05D000108 ORTHO05D006029 1.1e-12 77.4 201 30.8
Manes.08G123200 Manihot esculenta HOM05D000108 ORTHO05D006029 1.5e-12 77.0 192 32.8
CiPaw.07G014600 Carya illinoinensis HOM05D000108 ORTHO05D006029 1.9e-12 76.6 208 29.8
Cc02_g32690 Coffea canephora HOM05D000108 ORTHO05D006029 4.3e-12 75.5 200 30.0
Sed0006246 Sechium edule HOM05D000108 ORTHO05D006029 4.3e-12 75.5 192 29.7
Haze_25394 Corylus avellana HOM05D000108 ORTHO05D006029 7.3e-12 74.7 192 32.3
Aqoxy2G02776 Aquilegia oxysepala HOM05D000108 ORTHO05D006029 9.6e-12 74.3 193 31.6
CANSAT25G0558 Cannabis sativa HOM05D000108 ORTHO05D006029 9.6e-12 74.3 192 31.8
Cfa006545 Carpinus fangiana HOM05D000108 ORTHO05D006029 9.6e-12 74.3 192 31.8
ATR1155G012 Amborella trichopoda HOM05D000108 ORTHO05D006029 3.6e-11 72.4 194 32.5
arahy.Tifrunner.gnm1.ann1.G0F2H7 Arachis hypogaea HOM05D000108 ORTHO05D006029 3.6e-11 72.4 133 36.1
arahy.Tifrunner.gnm1.ann1.JIGP3F Arachis hypogaea HOM05D000108 ORTHO05D006029 3.6e-11 72.4 133 36.1
Zm00001eb260930 Zea mays HOM05D000108 ORTHO05D006029 4.7e-11 72.0 190 28.9
Peaxi162Scf00434g00333 Petunia axillaris HOM05D000108 ORTHO05D006029 1.1e-10 70.9 201 30.3
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 1.1e-10 70.9 192 30.2
Os08g0117000 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D006029 1.4e-10 70.5 192 27.6
MBI05_g33287_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D006029 1.8e-10 70.1 180 31.7
Actinidia19806 Actinidia chinensis HOM05D000273 ORTHO05D006029 4.0e-10 68.9 188 30.3
ClCG03G010060 Citrullus lanatus HOM05D000108 ORTHO05D006029 4.0e-10 68.9 50 66.0
COL.COLO4_13517 Corchorus olitorius HOM05D000273 ORTHO05D006029 5.2e-10 68.6 176 30.1
Eucgr.K01889 Eucalyptus grandis HOM05D000108 ORTHO05D006029 6.9e-10 68.2 197 29.4
TAR633G1062 Trochodendron aralioides HOM05D000108 ORTHO05D006029 6.9e-10 68.2 50 64.0
Lalb_Chr15g0077081 Lupinus albus HOM05D000108 ORTHO05D006029 1.5e-09 67.0 50 66.0
Phvul.006G094111 Phaseolus vulgaris HOM05D000108 ORTHO05D006029 1.5e-09 67.0 50 64.0
PGR102G1168 Punica granatum HOM05D000108 ORTHO05D006029 2.0e-09 66.6 220 30.9
HanXRQChr17g0550581 Helianthus annuus HOM05D000108 ORTHO05D006029 2.6e-09 66.2 149 37.6
AUR62005109 Chenopodium quinoa HOM05D000108 ORTHO05D006029 3.4e-09 65.9 50 66.0
PGSC0003DMG400028602 Solanum tuberosum HOM05D000108 ORTHO05D006029 3.4e-09 65.9 50 64.0
VMungo0540G1334 Vigna mungo HOM05D000108 ORTHO05D006029 4.4e-09 65.5 50 64.0
Migut.B01216 Erythranthe guttata HOM05D000108 ORTHO05D006029 5.8e-09 65.1 207 28.0
Lsat_1_v5_gn_3_61380 Lactuca sativa HOM05D000108 ORTHO05D006029 7.6e-09 64.7 50 62.0
Gohir.A11G263066 Gossypium hirsutum HOM05D000108 ORTHO05D006029 1.3e-08 63.9 50 62.0
CAN.G1134.20 Capsicum annuum HOM05D000108 ORTHO05D006029 1.7e-08 63.5 51 64.7
SHI18209 Sapria himalayana HOM05D000108 ORTHO05D006029 2.2e-08 63.2 50 60.0
Atru.chr11.1582 Acer truncatum HOM05D000108 ORTHO05D006029 3.8e-08 62.4 181 31.5
FAN05G1965 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.4e-08 61.6 48 60.4
Glyma.08G170500 Glycine max HOM05D000108 ORTHO05D006029 8.4e-08 61.2 51 62.7
Glyma.15G256400 Glycine max HOM05D000108 ORTHO05D006029 8.4e-08 61.2 51 62.7
COL.COLO4_16159 Corchorus olitorius HOM05D000108 ORTHO05D006029 2.4e-07 59.7 50 58.0
Haze_27413 Corylus avellana HOM05D000108 ORTHO05D006029 2.4e-07 59.7 49 59.2
vmacro19645 Vaccinium macrocarpon HOM05D000108 ORTHO05D006029 2.4e-07 59.7 49 59.2
Nitab4.5_0000131g0280 Nicotiana tabacum HOM05D000108 ORTHO05D001407 4.2e-07 58.9 147 34.7
FvH4_6g02040 Fragaria vesca HOM05D000108 ORTHO05D006029 7.1e-07 58.2 160 31.9
Oeu015682.1 Olea europaea HOM05D000108 ORTHO05D006029 9.3e-07 57.8 50 60.0
Ca_22442_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 1.2e-06 57.4 51 56.9
Ca_22449_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 1.2e-06 57.4 51 56.9
SGA_v2.0_scaffold45G17090 Striga asiatica HOM05D000141 ORTHO05D004489 1.2e-06 57.4 186 28.0
Atru.chr3.3 Acer truncatum HOM05D000141 ORTHO05D004489 3.5e-06 55.8 191 27.7
CDE08G1573 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 3.5e-06 55.8 155 29.7
Psat4g106800 Pisum sativum HOM05D000141 ORTHO05D004489 3.5e-06 55.8 51 54.9
unitig_748.g7256 Utricularia gibba HOM05D000141 ORTHO05D004489 3.5e-06 55.8 193 26.9
Cre17.g735200 Chlamydomonas reinhardtii HOM05D000108 ORTHO05D006029 4.6e-06 55.5 49 53.1
SalBow5G0045 Salvia bowleyana HOM05D000108 ORTHO05D006029 4.6e-06 55.5 50 58.0
SalBow5G4695 Salvia bowleyana HOM05D000108 ORTHO05D006029 4.6e-06 55.5 50 58.0
Lj4g0000360 Lotus japonicus HOM05D000141 ORTHO05D004489 6.0e-06 55.1 51 52.9
Aqoxy6G03061 Aquilegia oxysepala HOM05D000141 ORTHO05D004489 7.8e-06 54.7 50 54.0
Lalb_Chr16g0391741 Lupinus albus HOM05D000141 ORTHO05D004489 7.8e-06 54.7 52 51.9


User provided reference genes

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