Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO112G0116 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 0.0e+00 1733.0 863 100.0
SMO364G0066 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 0.0e+00 1125.5 643 89.3
SMO364G0311 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 2.8e-272 942.2 741 68.8
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 4.1e-271 938.3 820 64.1
SMO364G0221 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 5.7e-265 917.9 667 72.9
SMO112G0059 Selaginella moellendorffii HOM05D016263 ORTHO05D377983 2.6e-76 291.2 335 55.5
SMO112G0011 Selaginella moellendorffii HOM05D016263 ORTHO05D379149 8.8e-48 196.4 255 49.8
SMO137G0302 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.1e-29 136.3 497 28.0
Pp3c3_37320 Physcomitrium patens HOM05D003388 ORTHO05D003616 5.4e-29 134.0 541 25.9
SMO203G0010 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 4.5e-28 131.0 395 26.8
Mapoly0087s0002 Marchantia polymorpha HOM05D003388 ORTHO05D003616 1.0e-27 129.8 520 25.4
AagrBONN_evm.TU.Sc2ySwM_362.800 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.3e-27 129.4 402 29.6
Mapoly0063s0022 Marchantia polymorpha HOM05D003388 ORTHO05D003616 8.5e-27 126.7 396 27.5
Pp3c2_8360 Physcomitrium patens HOM05D003388 ORTHO05D003616 4.2e-26 124.4 447 24.6
SEGI_08014 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 5.5e-26 124.0 433 28.4
Atru.chr11.1747 Acer truncatum HOM05D003388 ORTHO05D003616 1.2e-25 122.9 403 27.0
Pp3c17_14770 Physcomitrium patens HOM05D003388 ORTHO05D003616 6.1e-25 120.6 478 24.9
CARHR025200 Cardamine hirsuta HOM05D003388 ORTHO05D003616 1.0e-24 119.8 360 28.9
Mapoly0028s0125 Marchantia polymorpha HOM05D003388 ORTHO05D003616 1.8e-24 119.0 334 29.3
Manes.01G034100 Manihot esculenta HOM05D003388 ORTHO05D003616 2.3e-24 118.6 406 27.3
Thecc.02G342400 Theobroma cacao HOM05D003388 ORTHO05D003616 2.3e-24 118.6 338 29.9
Duzib251G0885 Durio zibethinus HOM05D003388 ORTHO05D003616 4.0e-24 117.9 392 28.1
Thhalv10007288m.g Eutrema salsugineum HOM05D003388 ORTHO05D003616 4.0e-24 117.9 396 28.0
Mapoly0033s0081 Marchantia polymorpha HOM05D003388 ORTHO05D003616 5.2e-24 117.5 417 25.9
SEGI_33704 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 8.8e-24 116.7 373 29.0
Aa31LG7G8370 Aethionema arabicum HOM05D003388 ORTHO05D003616 1.5e-23 115.9 394 25.9
SEGI_00508 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.0e-23 115.5 411 27.7
SEGI_35950 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.0e-23 115.5 411 27.7
Pp3c16_17020 Physcomitrium patens HOM05D003388 ORTHO05D003616 3.4e-23 114.8 431 28.1
SEGI_26309 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 7.5e-23 113.6 466 27.5
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 7.5e-23 113.6 390 27.2
BcaC05g26390 Brassica carinata HOM05D003388 ORTHO05D003616 9.8e-23 113.2 377 28.6
Psat7g160040 Pisum sativum HOM05D003388 ORTHO05D003616 9.8e-23 113.2 387 25.6
SMO347G0589 Selaginella moellendorffii HOM05D002508 ORTHO05D003616 9.8e-23 113.2 293 29.7
SEGI_01292 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 9.8e-23 113.2 466 27.5
C05p24210 Brassica napus HOM05D003388 ORTHO05D003616 1.3e-22 112.8 393 28.2
BolC5t31157H Brassica oleracea HOM05D003388 ORTHO05D003616 1.3e-22 112.8 393 28.2
Pp3c1_34190 Physcomitrium patens HOM05D003388 ORTHO05D003616 2.2e-22 112.1 494 23.1
Duzib248G0503 Durio zibethinus HOM05D003388 ORTHO05D003616 2.8e-22 111.7 396 27.0
CSS0011500 Camellia sinensis var. sinensis HOM05D003388 ORTHO05D003616 3.7e-22 111.3 404 26.5
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 3.7e-22 111.3 379 25.6
Lj4g0011095 Lotus japonicus HOM05D003388 ORTHO05D003616 3.7e-22 111.3 385 26.8
Os03g0168700 Oryza sativa ssp. japonica HOM05D003388 ORTHO05D003616 3.7e-22 111.3 388 28.1
Sp1g22050 Schrenkiella parvula HOM05D003388 ORTHO05D003616 3.7e-22 111.3 341 27.6
FAN22G1619 Fragaria x ananassa HOM05D003388 ORTHO05D003616 6.3e-22 110.5 402 26.6
A09p40170 Brassica napus HOM05D003388 ORTHO05D003616 8.3e-22 110.2 391 27.6
Gohir.D13G076800 Gossypium hirsutum HOM05D003388 ORTHO05D003616 8.3e-22 110.2 394 28.4
COL.COLO4_27999 Corchorus olitorius HOM05D003388 ORTHO05D003616 1.1e-21 109.8 341 29.0
FAN12G0832 Fragaria x ananassa HOM05D003388 ORTHO05D003616 1.4e-21 109.4 402 26.6
Glyma.07G229200 Glycine max HOM05D003388 ORTHO05D003616 1.4e-21 109.4 390 26.9
Lalb_Chr09g0329211 Lupinus albus HOM05D003388 ORTHO05D003616 1.4e-21 109.4 474 25.3
unitig_747.g21182 Utricularia gibba HOM05D003388 ORTHO05D003616 1.4e-21 109.4 375 26.9
Sabra08G0066900 Salix brachista HOM05D003388 ORTHO05D003616 1.8e-21 109.0 406 26.4
AL1G38950 Arabidopsis lyrata HOM05D003388 ORTHO05D003616 2.4e-21 108.6 340 28.2
CiPaw.05G132000 Carya illinoinensis HOM05D003388 ORTHO05D003616 3.1e-21 108.2 398 25.4
Potri.008G089500 Populus trichocarpa HOM05D003388 ORTHO05D003616 3.1e-21 108.2 496 24.6
Aqoxy3G03455 Aquilegia oxysepala HOM05D003388 ORTHO05D003616 4.1e-21 107.8 401 25.7
BraA09t39515Z Brassica rapa HOM05D003388 ORTHO05D003616 4.1e-21 107.8 391 27.6
Carub.0001s2426 Capsella rubella HOM05D003388 ORTHO05D003616 4.1e-21 107.8 372 26.9
Cc11_g12730 Coffea canephora HOM05D003388 ORTHO05D003616 5.4e-21 107.5 471 24.8
FvH4_4g31050 Fragaria vesca HOM05D003388 ORTHO05D003616 5.4e-21 107.5 384 26.6
Gorai.013G087800 Gossypium raimondii HOM05D003388 ORTHO05D003616 5.4e-21 107.5 394 27.9
AagrBONN_evm.TU.Sc2ySwM_362.802 Anthoceros agrestis HOM05D003388 ORTHO05D003616 9.2e-21 106.7 410 26.8
AT1G26760 Arabidopsis thaliana HOM05D003388 ORTHO05D003616 9.2e-21 106.7 399 27.3
ClCG05G024100 Citrullus lanatus HOM05D003388 ORTHO05D003616 9.2e-21 106.7 388 27.8
SMO364G0457 Selaginella moellendorffii HOM05D016263 ORTHO05D376577 1.2e-20 106.3 82 63.4
Ciclev10031048m.g Citrus clementina HOM05D003388 ORTHO05D003616 1.6e-20 105.9 399 25.6
Rhsim10G0115600 Rhododendron simsii HOM05D003388 ORTHO05D003616 1.6e-20 105.9 342 27.5
TWI75G1739 Tripterygium wilfordii HOM05D003388 ORTHO05D003616 1.6e-20 105.9 402 24.1
Cfa008954 Carpinus fangiana HOM05D003388 ORTHO05D003616 2.0e-20 105.5 339 26.3
Nn3g17299 Nelumbo nucifera HOM05D003388 ORTHO05D003616 2.0e-20 105.5 406 25.6
Sed0018691 Sechium edule HOM05D003388 ORTHO05D003616 2.0e-20 105.5 394 25.9
VMungo0251G1426 Vigna mungo HOM05D003388 ORTHO05D003616 2.0e-20 105.5 389 27.2
Phvul.002G170100 Phaseolus vulgaris HOM05D003388 ORTHO05D003616 3.5e-20 104.8 465 25.8
HanXRQChr08g0210711 Helianthus annuus HOM05D003388 ORTHO05D003616 5.9e-20 104.0 389 25.7
PGR102G2155 Punica granatum HOM05D003388 ORTHO05D003616 5.9e-20 104.0 397 25.7
Mapoly0045s0135 Marchantia polymorpha HOM05D003388 ORTHO05D003616 7.7e-20 103.6 405 25.9
Mapoly0045s0136 Marchantia polymorpha HOM05D003388 ORTHO05D003616 7.7e-20 103.6 469 25.6
Mapoly0052s0121 Marchantia polymorpha HOM05D003388 ORTHO05D003616 7.7e-20 103.6 474 25.9
Medtr4g082140 Medicago truncatula HOM05D003388 ORTHO05D003616 7.7e-20 103.6 403 24.6
EL10Ac6g13243 Beta vulgaris HOM05D003388 ORTHO05D003616 1.0e-19 103.2 404 26.0
Prupe.1G278000 Prunus persica HOM05D003388 ORTHO05D003616 1.0e-19 103.2 401 27.2
DCAR_007170 Daucus carota HOM05D003388 ORTHO05D003616 1.3e-19 102.8 389 24.2
RcHm_v2.0_Chr4g0439431 Rosa chinensis HOM05D003388 ORTHO05D003616 1.3e-19 102.8 396 25.5
Haze_11983 Corylus avellana HOM05D003388 ORTHO05D003616 1.7e-19 102.4 399 25.6
TAR629G0929 Trochodendron aralioides HOM05D003388 ORTHO05D003616 1.7e-19 102.4 494 24.5
MELO3C012115.2 Cucumis melo HOM05D003388 ORTHO05D003616 2.3e-19 102.1 381 26.2
Nitab4.5_0000040g0070 Nicotiana tabacum HOM05D003388 ORTHO05D003616 2.3e-19 102.1 406 25.1
CANSAT64G0380 Cannabis sativa HOM05D003388 ORTHO05D003616 2.9e-19 101.7 492 25.2
Ca_18822_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 3.8e-19 101.3 340 27.6
Ca_30739_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 3.8e-19 101.3 340 27.6
MSTRG.7787 Avicennia marina HOM05D003388 ORTHO05D003616 6.6e-19 100.5 479 24.0
PSO832G1848 Papaver somniferum HOM05D003388 ORTHO05D003616 6.6e-19 100.5 413 24.5
Ah.03g134820 Amaranthus hybridus HOM05D003388 ORTHO05D003616 8.6e-19 100.1 367 25.6
PSO832G3938 Papaver somniferum HOM05D003388 ORTHO05D003616 8.6e-19 100.1 405 25.2
SalBow2G1725 Salvia bowleyana HOM05D003388 ORTHO05D003616 8.6e-19 100.1 422 25.8
SEGI_40344 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 8.6e-19 100.1 493 26.6
CsaV3_5G032950 Cucumis sativus L. HOM05D003388 ORTHO05D003616 1.1e-18 99.8 415 24.8
Hma1.2p1_1079F.1_g254900 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 1.1e-18 99.8 382 24.1
Nitab4.5_0004300g0010 Nicotiana tabacum HOM05D003388 ORTHO05D003616 1.9e-18 99.0 406 24.1
Lsat_1_v5_gn_8_50121 Lactuca sativa HOM05D003388 ORTHO05D003616 2.5e-18 98.6 343 25.1
Lj3P1035T24 Lonicera japonica HOM05D003388 ORTHO05D003616 2.5e-18 98.6 336 25.9
Dinv34132 Davidia involucrata HOM05D003388 ORTHO05D003616 3.3e-18 98.2 431 23.7
Peaxi162Scf00222g00073 Petunia axillaris HOM05D003388 ORTHO05D003616 4.3e-18 97.8 406 25.1
THA.LOC104803358 Tarenaya hassleriana HOM05D003388 ORTHO05D003616 4.3e-18 97.8 399 25.6
PGSC0003DMG400018436 Solanum tuberosum HOM05D003388 ORTHO05D003616 9.5e-18 96.7 398 24.9
Eucgr.B03207 Eucalyptus grandis HOM05D003388 ORTHO05D003616 1.2e-17 96.3 408 25.0
PSO013G0084 Papaver somniferum HOM05D003388 ORTHO05D003616 1.2e-17 96.3 390 26.2
QL03p068106 Quercus lobata HOM05D003388 ORTHO05D003616 1.6e-17 95.9 476 23.7
Sopen05g003620 Solanum pennellii HOM05D003388 ORTHO05D003616 1.6e-17 95.9 398 24.9
MCO03G599 Micromonas commoda HOM05D003388 ORTHO05D003616 2.1e-17 95.5 365 28.2
AUR62032817 Chenopodium quinoa HOM05D003388 ORTHO05D003616 2.8e-17 95.1 398 24.4
AUR62005822 Chenopodium quinoa HOM05D003388 ORTHO05D003616 4.7e-17 94.4 397 24.9
Mapoly0058s0063 Marchantia polymorpha HOM05D003388 ORTHO05D003616 6.1e-17 94.0 385 26.0
CAN.G1335.17 Capsicum annuum HOM05D003388 ORTHO05D003616 1.0e-16 93.2 395 25.3
SMO196G0261 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.0e-16 93.2 469 25.6
GSVIVG01012615001 Vitis vinifera HOM05D003388 ORTHO05D003616 1.0e-16 93.2 382 23.6
AagrBONN_evm.TU.Sc2ySwM_228.716 Anthoceros agrestis HOM05D013582 ORTHO05D003616 3.0e-16 91.7 449 26.7
SEGI_24693 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 3.0e-16 91.7 357 24.6
Cpa.g.sc1.49 Carica papaya HOM05D003388 ORTHO05D003616 6.8e-16 90.5 227 26.9
HPP92_007854 Vanilla planifolia HOM05D003388 ORTHO05D003616 8.9e-16 90.1 260 29.2
Mapoly0009s0129 Marchantia polymorpha HOM05D003388 ORTHO05D003616 1.2e-15 89.7 391 24.0
MD13G1069000 Malus domestica HOM05D003388 ORTHO05D003616 1.5e-15 89.4 350 24.3
AagrBONN_evm.TU.Sc2ySwM_362.2583 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.6e-15 88.6 343 27.7
SMO361G0130 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 2.6e-15 88.6 404 21.8
AagrBONN_evm.TU.Sc2ySwM_362.2541 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.3e-14 86.3 386 25.4
Solyc05g007760.2 Solanum lycopersicum HOM05D003388 ORTHO05D003616 2.2e-14 85.5 374 23.8
AagrBONN_evm.TU.Sc2ySwM_368.1893 Anthoceros agrestis HOM05D003388 ORTHO05D003616 4.1e-13 81.3 526 21.5
SEGI_15178 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 4.1e-13 81.3 409 26.4
SMO276G0050 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 2.0e-12 79.0 408 22.1
SMO201G0158 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 2.3e-11 75.5 430 24.4
FAN17G1342 Fragaria x ananassa HOM05D003388 ORTHO05D003616 5.0e-11 74.3 183 29.0
SMO171G0130 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.1e-10 73.2 266 32.0
AagrBONN_evm.TU.Sc2ySwM_362.2588 Anthoceros agrestis HOM05D003388 ORTHO05D003616 7.3e-10 70.5 273 27.5
AagrBONN_evm.TU.Sc2ySwM_228.5463 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.8e-09 68.6 297 25.3
SEGI_38646 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.0e-07 62.4 288 26.7
MBI13_g11342_MAGBIO Magnolia biondii HOM05D003388 ORTHO05D003616 7.5e-07 60.5 274 22.3
AagrBONN_evm.TU.Sc2ySwM_228.5461 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.3e-06 59.7 199 27.1
Oeu005759.1 Olea europaea HOM05D003388 ORTHO05D003616 1.3e-06 59.7 218 23.9
SEGI_01320 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 4.9e-06 57.8 156 29.5


User provided reference genes

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