Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO112G0099 Selaginella moellendorffii HOM05D004735 ORTHO05D005243 9.2e-237 823.2 416 100.0
SMO364G0040 Selaginella moellendorffii HOM05D004735 ORTHO05D005243 1.6e-204 716.1 416 88.9
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 3.1e-22 110.5 371 26.4
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 3.9e-17 93.6 111 43.2
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 6.6e-17 92.8 102 48.0
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 6.6e-17 92.8 217 29.5
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 8.6e-17 92.4 204 32.4
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.1e-16 92.0 112 42.0
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.1e-16 92.0 112 42.0
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 1.1e-16 92.0 112 42.0
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 1.5e-16 91.7 112 40.2
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 1.5e-16 91.7 103 43.7
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 3.3e-16 90.5 111 39.6
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 4.3e-16 90.1 108 39.8
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 5.6e-16 89.7 111 39.6
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 5.6e-16 89.7 107 43.0
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 7.3e-16 89.4 106 42.5
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 9.5e-16 89.0 360 27.2
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 9.5e-16 89.0 102 47.1
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 9.5e-16 89.0 102 47.1
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 2.1e-15 87.8 108 37.0
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 2.1e-15 87.8 336 25.6
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 2.8e-15 87.4 111 39.6
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 3.6e-15 87.0 111 38.7
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 3.6e-15 87.0 110 38.2
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 4.7e-15 86.7 108 38.9
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 6.2e-15 86.3 112 41.1
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 8.1e-15 85.9 102 45.1
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 8.1e-15 85.9 108 38.0
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 1.1e-14 85.5 109 39.4
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 1.1e-14 85.5 106 41.5
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 1.4e-14 85.1 112 38.4
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 1.4e-14 85.1 113 39.8
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 1.4e-14 85.1 102 44.1
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 1.4e-14 85.1 111 37.8
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 2.3e-14 84.3 111 37.8
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 3.1e-14 84.0 148 36.5
Gohir.A11G063866 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.1e-14 84.0 112 39.3
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 3.1e-14 84.0 140 36.4
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 3.1e-14 84.0 103 41.7
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 4.0e-14 83.6 113 40.7
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 4.0e-14 83.6 109 39.4
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 4.0e-14 83.6 110 41.8
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 4.0e-14 83.6 111 38.7
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 5.2e-14 83.2 102 43.1
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 5.2e-14 83.2 102 43.1
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 5.2e-14 83.2 112 35.7
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 5.2e-14 83.2 108 37.0
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 5.2e-14 83.2 108 37.0
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 5.2e-14 83.2 108 37.0
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 5.2e-14 83.2 101 40.6
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 6.8e-14 82.8 109 36.7
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 6.8e-14 82.8 113 38.9
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 6.8e-14 82.8 103 40.8
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 6.8e-14 82.8 108 36.1
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 6.8e-14 82.8 101 40.6
Lalb_Chr22g0359841 Lupinus albus HOM05D004735 ORTHO05D005243 6.8e-14 82.8 111 37.8
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 8.9e-14 82.4 105 36.2
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 8.9e-14 82.4 112 40.2
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 8.9e-14 82.4 112 39.3
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 1.2e-13 82.0 102 43.1
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 1.2e-13 82.0 106 36.8
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.5e-13 81.6 109 38.5
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 2.0e-13 81.3 102 44.1
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 2.0e-13 81.3 101 42.6
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 2.0e-13 81.3 112 41.1
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 2.0e-13 81.3 106 38.7
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 2.6e-13 80.9 108 38.9
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 3.4e-13 80.5 108 38.0
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 3.4e-13 80.5 102 43.1
Lj7A617T73 Lonicera japonica HOM05D004735 ORTHO05D005243 3.4e-13 80.5 108 38.0
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 4.4e-13 80.1 102 43.1
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 4.4e-13 80.1 109 37.6
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 4.4e-13 80.1 111 36.9
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 4.4e-13 80.1 106 39.6
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 4.4e-13 80.1 113 38.1
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 4.4e-13 80.1 110 40.0
CSS0035487 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 5.8e-13 79.7 108 35.2
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 7.5e-13 79.3 101 42.6
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 1.3e-12 78.6 277 27.4
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 1.3e-12 78.6 106 36.8
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 2.9e-12 77.4 102 40.2
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 2.9e-12 77.4 111 35.1
SEGI_21903 Sequoiadendron giganteum HOM05D004735 ORTHO05D005243 3.7e-12 77.0 109 37.6
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 3.7e-12 77.0 106 40.6
Actinidia19551 Actinidia chinensis HOM05D004735 ORTHO05D005243 4.9e-12 76.6 112 35.7
Cc07_g01340 Coffea canephora HOM05D004735 ORTHO05D005243 4.9e-12 76.6 109 35.8
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 6.4e-12 76.3 106 37.7
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 8.3e-12 75.9 102 38.2
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 8.3e-12 75.9 94 38.3
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 1.1e-11 75.5 108 37.0
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 1.1e-11 75.5 106 37.7
CSS0050200 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.9e-11 74.7 108 34.3
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 1.9e-11 74.7 102 37.3
CDE02G4423 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 2.4e-11 74.3 103 38.8
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 3.2e-11 73.9 102 37.3
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 3.2e-11 73.9 108 38.0
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 3.2e-11 73.9 328 24.7
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 3.2e-11 73.9 328 24.7
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 7.1e-11 72.8 101 36.6
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 7.1e-11 72.8 108 34.3
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 6.0e-10 69.7 109 35.8
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 7.8e-10 69.3 109 34.9
CSS0009135 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.0e-09 68.9 108 32.4
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 1.0e-09 68.9 101 35.6
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.0e-09 68.9 102 36.3
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.3e-09 68.6 102 35.3
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 1.3e-09 68.6 102 40.2
Peaxi162Scf00420g00843 Petunia axillaris HOM05D004735 ORTHO05D005243 1.7e-09 68.2 105 33.3
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 2.3e-09 67.8 106 36.8
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 2.3e-09 67.8 91 38.5
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 2.3e-09 67.8 304 23.0
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 2.3e-09 67.8 112 34.8
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.9e-09 67.0 95 37.9
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 3.9e-09 67.0 102 36.3
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 1.5e-08 65.1 320 22.2
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 1.9e-08 64.7 189 27.0
Solyc02g094530.1 Solanum lycopersicum HOM05D004735 ORTHO05D005243 4.3e-08 63.5 155 29.0
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 5.6e-08 63.2 60 50.0
SHI13678 Sapria himalayana HOM05D004735 ORTHO05D005243 5.6e-08 63.2 102 33.3
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 5.6e-08 63.2 305 23.6
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 1.1e-06 58.9 58 44.8
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 4.0e-06 57.0 110 30.9
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 5.2e-06 56.6 101 31.7


User provided reference genes

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