Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 6.8e-54 213.8 110 100.0
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.3e-32 141.4 75 98.7
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 8.1e-31 137.1 75 96.0
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.1e-22 110.2 75 73.3
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.8e-22 109.4 75 70.7
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.8e-22 109.4 75 72.0
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.4e-22 109.0 75 70.7
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 4.0e-22 108.2 75 70.7
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 4.0e-22 108.2 75 69.3
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.2e-22 107.8 75 70.7
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 5.2e-22 107.8 75 69.3
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 5.2e-22 107.8 75 70.7
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 5.2e-22 107.8 75 70.7
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 6.8e-22 107.5 75 70.7
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 6.8e-22 107.5 75 70.7
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 6.8e-22 107.5 75 70.7
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 6.8e-22 107.5 75 70.7
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 6.8e-22 107.5 75 69.3
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 6.8e-22 107.5 75 70.7
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 8.9e-22 107.1 75 69.3
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 8.9e-22 107.1 75 69.3
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 8.9e-22 107.1 75 69.3
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 8.9e-22 107.1 75 69.3
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.2e-21 106.7 74 70.3
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 1.5e-21 106.3 75 70.7
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 1.5e-21 106.3 75 68.0
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 1.5e-21 106.3 75 70.7
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.5e-21 106.3 75 69.3
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.5e-21 106.3 75 69.3
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 2.0e-21 105.9 75 69.3
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 2.0e-21 105.9 75 68.0
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.0e-21 105.9 75 69.3
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 2.0e-21 105.9 75 69.3
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 2.0e-21 105.9 75 69.3
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.0e-21 105.9 75 68.0
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 2.6e-21 105.5 75 68.0
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 2.6e-21 105.5 75 68.0
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.6e-21 105.5 75 68.0
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 2.6e-21 105.5 75 68.0
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 2.6e-21 105.5 75 68.0
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 2.6e-21 105.5 75 69.3
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 3.4e-21 105.1 75 68.0
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 4.4e-21 104.8 75 66.7
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 4.4e-21 104.8 75 66.7
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 4.4e-21 104.8 75 68.0
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 4.4e-21 104.8 75 68.0
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 4.4e-21 104.8 75 69.3
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 4.4e-21 104.8 75 69.3
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 4.4e-21 104.8 75 66.7
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 4.4e-21 104.8 75 66.7
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 68.0
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 68.0
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 66.7
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 66.7
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 68.0
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 68.0
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 68.0
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 69.3
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 69.3
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 65.3
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 5.8e-21 104.4 75 66.7
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.6e-21 104.0 75 69.3
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 7.6e-21 104.0 75 69.3
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 7.6e-21 104.0 75 66.7
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 7.6e-21 104.0 75 66.7
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 7.6e-21 104.0 75 65.3
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 7.6e-21 104.0 75 66.7
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 7.6e-21 104.0 75 68.0
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 7.6e-21 104.0 75 68.0
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 7.6e-21 104.0 75 68.0
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 9.9e-21 103.6 75 66.7
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 9.9e-21 103.6 75 66.7
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 9.9e-21 103.6 76 69.7
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 9.9e-21 103.6 75 66.7
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 9.9e-21 103.6 75 66.7
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 9.9e-21 103.6 74 67.6
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 9.9e-21 103.6 75 65.3
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 9.9e-21 103.6 75 66.7
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 9.9e-21 103.6 75 69.3
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 9.9e-21 103.6 75 68.0
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.3e-20 103.2 75 66.7
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 1.3e-20 103.2 75 66.7
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.3e-20 103.2 75 66.7
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 1.7e-20 102.8 75 66.7
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.7e-20 102.8 75 64.0
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.7e-20 102.8 75 68.0
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.7e-20 102.8 75 68.0
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.2e-20 102.4 75 66.7
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 2.2e-20 102.4 75 66.7
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 2.2e-20 102.4 75 68.0
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 2.2e-20 102.4 75 68.0
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.2e-20 102.4 75 65.3
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.9e-20 102.1 75 66.7
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 2.9e-20 102.1 75 65.3
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 2.9e-20 102.1 75 65.3
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 2.9e-20 102.1 75 66.7
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 2.9e-20 102.1 75 66.7
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 2.9e-20 102.1 75 66.7
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.8e-20 101.7 75 64.0
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.8e-20 101.7 75 64.0
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.8e-20 101.7 75 64.0
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 3.8e-20 101.7 75 64.0
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.8e-20 101.7 75 68.0
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 3.8e-20 101.7 75 64.0
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 3.8e-20 101.7 75 65.3
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 3.8e-20 101.7 74 67.6
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 4.9e-20 101.3 75 64.0
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 4.9e-20 101.3 75 66.7
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 4.9e-20 101.3 75 66.7
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 4.9e-20 101.3 75 66.7
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 4.9e-20 101.3 75 66.7
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 65.3
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 64.0
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 65.3
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 65.3
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 65.3
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 65.3
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 65.3
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 65.3
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 66.7
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 66.7
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 6.4e-20 100.9 75 66.7
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 8.4e-20 100.5 75 66.7
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 8.4e-20 100.5 75 66.7
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.4e-20 100.5 75 65.3
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.4e-20 100.5 75 65.3
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 8.4e-20 100.5 75 66.7
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 8.4e-20 100.5 75 62.7
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 8.4e-20 100.5 75 64.0
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.1e-19 100.1 75 65.3
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.1e-19 100.1 75 66.7
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.1e-19 100.1 75 65.3
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.4e-19 99.8 82 61.0
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.4e-19 99.8 67 74.6
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.4e-19 99.8 75 62.7
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 1.4e-19 99.8 75 62.7
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.4e-19 99.8 75 62.7
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 2.4e-19 99.0 75 65.3
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 2.4e-19 99.0 75 66.7
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 3.2e-19 98.6 75 65.3
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 4.1e-19 98.2 80 63.8
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 5.4e-19 97.8 75 64.0
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 7.1e-19 97.4 75 65.3
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.6e-18 96.3 67 65.7
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.5e-18 95.1 76 64.5
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 6.0e-18 94.4 67 68.7
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 7.8e-18 94.0 76 63.2
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 7.8e-18 94.0 75 62.7
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 7.8e-18 94.0 67 67.2
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 1.0e-17 93.6 67 67.2
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 5.1e-17 91.3 75 60.0
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 1.1e-16 90.1 75 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.3e-16 87.4 83 55.4
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 7.3e-16 87.4 82 57.3
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.6e-15 86.3 81 60.5
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 4.0e-14 81.6 85 49.4
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 9.9e-13 77.0 63 60.3
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 9.9e-13 77.0 63 58.7
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 8.4e-12 73.9 88 44.3
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.4e-11 73.2 67 55.2
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 3.0e-09 65.5 64 45.3
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 8.7e-09 63.9 70 47.1
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 5.6e-08 61.2 40 70.0
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 9.6e-08 60.5 41 68.3
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.4e-06 56.6 49 55.1
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 4.0e-06 55.1 52 48.1


User provided reference genes

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