Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.5e-162 576.2 318 100.0
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.0e-81 307.8 182 91.2
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 3.9e-25 119.8 146 49.3
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 1.8e-22 110.9 157 41.4
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 9.2e-19 98.6 163 40.5
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.6e-18 97.8 119 44.5
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 4.0e-14 83.2 86 47.7
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.6e-13 80.5 86 47.7
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 4.4e-13 79.7 86 47.7
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 7.5e-13 79.0 86 47.7
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 1.7e-12 77.8 166 36.1
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 2.2e-12 77.4 170 33.5
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.2e-12 77.4 77 45.5
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 2.2e-12 77.4 85 44.7
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.9e-12 77.0 95 44.2
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 3.7e-12 76.6 86 45.3
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 4.9e-12 76.3 167 31.7
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 4.9e-12 76.3 88 47.7
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 6.4e-12 75.9 87 43.7
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.1e-11 75.1 89 44.9
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.1e-11 75.1 83 47.0
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.4e-11 74.7 86 46.5
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 1.4e-11 74.7 156 35.9
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.9e-11 74.3 77 45.5
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 2.4e-11 73.9 85 48.2
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 4.1e-11 73.2 77 45.5
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 4.1e-11 73.2 77 46.8
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 4.1e-11 73.2 171 31.6
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 4.1e-11 73.2 86 44.2
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 4.1e-11 73.2 89 47.2
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 5.4e-11 72.8 74 45.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 5.4e-11 72.8 172 31.4
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 5.4e-11 72.8 85 47.1
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 5.4e-11 72.8 96 40.6
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 7.0e-11 72.4 86 45.3
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 9.2e-11 72.0 87 46.0
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 9.2e-11 72.0 77 45.5
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 9.2e-11 72.0 148 33.1
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.2e-10 71.6 86 45.3
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 1.2e-10 71.6 77 45.5
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 1.2e-10 71.6 77 42.9
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.6e-10 71.2 148 33.8
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.6e-10 71.2 77 45.5
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.1e-10 70.9 77 44.2
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.1e-10 70.9 173 31.2
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 2.1e-10 70.9 86 41.9
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.7e-10 70.5 103 43.7
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 2.7e-10 70.5 74 45.9
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 2.7e-10 70.5 86 44.2
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 3.5e-10 70.1 86 43.0
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 3.5e-10 70.1 88 44.3
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 4.6e-10 69.7 146 32.9
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 4.6e-10 69.7 85 44.7
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 4.6e-10 69.7 88 44.3
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 6.0e-10 69.3 86 43.0
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 6.0e-10 69.3 89 40.4
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 6.0e-10 69.3 170 30.6
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 6.0e-10 69.3 86 45.3
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 1.0e-09 68.6 85 42.4
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 1.3e-09 68.2 87 43.7
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 1.3e-09 68.2 74 43.2
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 1.3e-09 68.2 174 32.8
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 3.0e-09 67.0 86 38.4
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 3.0e-09 67.0 81 42.0
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 3.9e-09 66.6 72 44.4
CBR_g46437 Chara braunii HOM05D001925 ORTHO05D004257 3.9e-09 66.6 72 43.1
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.9e-09 66.6 87 44.8
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 3.9e-09 66.6 72 43.1
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 5.1e-09 66.2 72 43.1
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 5.1e-09 66.2 88 45.5
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 5.1e-09 66.2 72 44.4
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 5.1e-09 66.2 72 44.4
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 5.1e-09 66.2 85 42.4
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 5.1e-09 66.2 70 44.3
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 5.1e-09 66.2 74 40.5
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 6.6e-09 65.9 88 42.0
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 6.6e-09 65.9 69 46.4
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 8.6e-09 65.5 88 42.0
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 8.6e-09 65.5 181 29.3
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 1.1e-08 65.1 166 30.7
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.1e-08 65.1 91 39.6
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.1e-08 65.1 91 39.6
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.1e-08 65.1 79 41.8
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.1e-08 65.1 85 41.2
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.1e-08 65.1 80 41.2
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-08 65.1 80 41.2
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-08 65.1 80 41.2
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-08 65.1 80 41.2
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-08 65.1 80 41.2
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-08 65.1 80 41.2
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.1e-08 65.1 93 36.6
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.1e-08 65.1 87 42.5
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 1.5e-08 64.7 87 44.8
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 1.5e-08 64.7 87 44.8
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 1.5e-08 64.7 87 44.8
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 1.5e-08 64.7 87 44.8
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.5e-08 64.7 72 41.7
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-08 64.7 80 41.2
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 1.5e-08 64.7 89 41.6
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 1.5e-08 64.7 100 40.0
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.5e-08 64.7 86 44.2
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.5e-08 64.7 86 44.2
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 1.5e-08 64.7 140 32.9
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 1.5e-08 64.7 89 42.7
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 1.5e-08 64.7 79 46.8
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.9e-08 64.3 89 42.7
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 1.9e-08 64.3 168 32.7
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 1.9e-08 64.3 87 42.5
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.9e-08 64.3 86 41.9
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 2.5e-08 63.9 75 44.0
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 2.5e-08 63.9 70 45.7
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 3.3e-08 63.5 67 47.8
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 3.3e-08 63.5 77 44.2
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 4.3e-08 63.2 144 31.2
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 4.3e-08 63.2 72 41.7
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 4.3e-08 63.2 152 31.6
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 4.3e-08 63.2 89 42.7
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 4.3e-08 63.2 85 40.0
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 7.3e-08 62.4 56 53.6
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 7.3e-08 62.4 101 38.6
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 9.5e-08 62.0 152 30.9
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 9.5e-08 62.0 72 40.3
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 9.5e-08 62.0 72 40.3
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 9.5e-08 62.0 88 42.0
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.2e-07 61.6 151 33.1
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 1.2e-07 61.6 86 40.7
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 1.6e-07 61.2 89 40.4
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 1.6e-07 61.2 147 32.7
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 1.6e-07 61.2 89 40.4
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.6e-07 61.2 68 45.6
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 2.8e-07 60.5 114 35.1
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 2.8e-07 60.5 59 45.8
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.8e-07 60.5 96 35.4
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 2.8e-07 60.5 86 39.5
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 4.7e-07 59.7 89 39.3
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 4.7e-07 59.7 56 50.0
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 6.2e-07 59.3 117 35.0
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 6.2e-07 59.3 89 39.3
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 6.2e-07 59.3 77 40.3
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 8.1e-07 58.9 134 34.3
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 8.1e-07 58.9 71 42.3
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 8.1e-07 58.9 91 38.5
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 1.1e-06 58.5 63 44.4
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 1.1e-06 58.5 76 35.5
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.1e-06 58.5 71 38.0
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.1e-06 58.5 69 39.1
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.4e-06 58.2 164 31.1
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.8e-06 57.8 60 46.7
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 1.8e-06 57.8 156 34.0
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.8e-06 57.8 58 50.0
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 2.3e-06 57.4 87 34.5
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 2.3e-06 57.4 58 44.8
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.1e-06 57.0 110 33.6
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 3.1e-06 57.0 63 41.3
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 3.1e-06 57.0 65 43.1
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 3.1e-06 57.0 103 32.0
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 4.0e-06 56.6 71 38.0
HanXRQChr08g0210661 Helianthus annuus HOM05D009095 ORTHO05D005932 4.0e-06 56.6 85 38.8
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 4.0e-06 56.6 137 35.8
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 4.0e-06 56.6 168 31.0
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 5.2e-06 56.2 71 38.0
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 5.2e-06 56.2 72 41.7
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.8e-06 55.8 110 33.6
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 6.8e-06 55.8 113 31.0
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 8.9e-06 55.5 90 40.0
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 8.9e-06 55.5 152 31.6
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 8.9e-06 55.5 103 38.8
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 8.9e-06 55.5 71 38.0


User provided reference genes

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