Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 3.0e-29 131.0 58 100.0
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 5.4e-26 120.2 58 91.4
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 9.2e-26 119.4 58 89.7
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 9.2e-26 119.4 58 89.7
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 1.2e-25 119.0 58 89.7
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 1.2e-25 119.0 58 87.9
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.6e-25 118.6 58 87.9
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 1.6e-25 118.6 58 87.9
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 1.6e-25 118.6 58 87.9
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 1.6e-25 118.6 58 87.9
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 1.6e-25 118.6 58 87.9
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 2.0e-25 118.2 58 87.9
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 2.0e-25 118.2 58 87.9
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 2.0e-25 118.2 58 87.9
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 2.0e-25 118.2 58 87.9
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 2.0e-25 118.2 58 87.9
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 2.0e-25 118.2 58 87.9
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 2.0e-25 118.2 58 87.9
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 2.0e-25 118.2 58 87.9
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 2.0e-25 118.2 58 87.9
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 2.7e-25 117.9 58 86.2
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 2.7e-25 117.9 58 87.9
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 2.7e-25 117.9 58 87.9
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 3.5e-25 117.5 58 84.5
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 3.5e-25 117.5 58 86.2
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 3.5e-25 117.5 58 87.9
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 3.5e-25 117.5 58 86.2
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 3.5e-25 117.5 58 86.2
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 3.5e-25 117.5 58 84.5
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 3.5e-25 117.5 58 87.9
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 3.5e-25 117.5 58 86.2
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 4.6e-25 117.1 58 84.5
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 4.6e-25 117.1 58 86.2
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 4.6e-25 117.1 58 86.2
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 5.9e-25 116.7 58 86.2
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 5.9e-25 116.7 58 86.2
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 5.9e-25 116.7 58 86.2
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 5.9e-25 116.7 58 84.5
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 5.9e-25 116.7 58 84.5
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 5.9e-25 116.7 58 86.2
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 5.9e-25 116.7 58 86.2
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 5.9e-25 116.7 58 86.2
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 7.8e-25 116.3 58 86.2
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 7.8e-25 116.3 58 86.2
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 7.8e-25 116.3 58 87.9
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 7.8e-25 116.3 58 84.5
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 7.8e-25 116.3 58 84.5
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 7.8e-25 116.3 58 84.5
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 7.8e-25 116.3 58 84.5
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 1.0e-24 115.9 58 86.2
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.0e-24 115.9 58 84.5
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 1.0e-24 115.9 58 84.5
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 1.0e-24 115.9 58 84.5
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 1.0e-24 115.9 58 84.5
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.0e-24 115.9 58 84.5
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 1.0e-24 115.9 58 82.8
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 1.0e-24 115.9 58 82.8
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 1.0e-24 115.9 58 82.8
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 1.0e-24 115.9 58 84.5
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 1.0e-24 115.9 58 84.5
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 84.5
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 84.5
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 84.5
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 82.8
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 82.8
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 84.5
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 84.5
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 81.0
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 82.8
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 84.5
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 82.8
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 1.3e-24 115.5 58 84.5
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.7e-24 115.2 58 82.8
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 1.7e-24 115.2 58 82.8
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.7e-24 115.2 58 84.5
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 1.7e-24 115.2 58 82.8
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 1.7e-24 115.2 58 86.2
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 1.7e-24 115.2 58 82.8
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 84.5
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 2.3e-24 114.8 58 82.8
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 2.3e-24 114.8 58 82.8
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 2.3e-24 114.8 58 82.8
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 2.3e-24 114.8 58 82.8
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 2.3e-24 114.8 58 82.8
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 2.3e-24 114.8 58 82.8
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 84.5
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 2.3e-24 114.8 58 82.8
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 84.5
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 84.5
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 82.8
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 2.3e-24 114.8 58 84.5
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 3.0e-24 114.4 58 82.8
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 3.9e-24 114.0 58 84.5
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 6.6e-24 113.2 58 84.5
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 6.6e-24 113.2 58 81.0
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 6.6e-24 113.2 58 81.0
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 8.6e-24 112.8 58 81.0
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 8.6e-24 112.8 58 81.0
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 8.6e-24 112.8 58 81.0
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.1e-23 112.5 58 79.3
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.1e-23 112.5 58 79.3
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.1e-23 112.5 58 82.8
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.9e-23 111.7 58 82.8
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 2.5e-23 111.3 58 79.3
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 2.5e-23 111.3 58 79.3
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 4.3e-23 110.5 58 79.3
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 5.6e-23 110.2 55 85.5
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 7.3e-23 109.8 58 79.3
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 9.5e-23 109.4 58 77.6
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 1.2e-22 109.0 58 81.0
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 1.2e-22 109.0 58 81.0
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 6.2e-22 106.7 57 75.4
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 8.0e-22 106.3 58 77.6
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 8.0e-22 106.3 58 82.8
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 1.0e-21 105.9 53 84.9
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 1.4e-21 105.5 57 75.4
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 1.8e-21 105.1 58 77.6
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 5.2e-21 103.6 51 84.3
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 9.8e-20 99.4 48 87.5
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 2.2e-19 98.2 54 74.1
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 2.9e-19 97.8 48 85.4
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 1.4e-18 95.5 48 81.2
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 3.5e-17 90.9 57 61.4
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 4.6e-17 90.5 48 81.2
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 6.2e-14 80.1 56 58.9
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 8.1e-14 79.7 45 71.1
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 3.4e-12 74.3 36 80.6


User provided reference genes

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