Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO086G0042 Selaginella moellendorffii HOM05D001033 ORTHO05D005438 1.8e-63 245.7 121 100.0
SMO086G0053 Selaginella moellendorffii HOM05D001033 ORTHO05D005438 1.8e-63 245.7 121 100.0
QL93p0270_0001 Quercus lobata HOM05D001033 ORTHO05D005438 8.9e-31 137.1 120 58.3
Hma1.2p1_2223F.1_g317430 Hydrangea macrophylla HOM05D001033 ORTHO05D005438 3.4e-30 135.2 120 56.7
Glyma.13G068600 Glycine max HOM05D001033 ORTHO05D005438 4.4e-30 134.8 120 55.8
Gohir.1Z049599 Gossypium hirsutum HOM05D001033 ORTHO05D005438 7.5e-30 134.0 120 55.8
Gohir.D01G102268 Gossypium hirsutum HOM05D001033 ORTHO05D005438 7.5e-30 134.0 120 55.8
VMungo0498G0001 Vigna mungo HOM05D001033 ORTHO05D005438 7.5e-30 134.0 120 55.0
RcHm_v2.0_CPg0502161 Rosa chinensis HOM05D001033 ORTHO05D005438 9.8e-30 133.7 120 55.0
Phvul.011G056516 Phaseolus vulgaris HOM05D001033 ORTHO05D005438 2.2e-29 132.5 120 54.2
ATCG00440 Arabidopsis thaliana HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 55.0
C02p43490 Brassica napus HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
C09p40500 Brassica napus HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
BolSC45t60863H Brassica oleracea HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
BolSC45t60948H Brassica oleracea HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
BolSC46t60995H Brassica oleracea HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
BolSC46t61040H Brassica oleracea HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
BolSC47t61102H Brassica oleracea HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
BraSC25t45843Z Brassica rapa HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
BraSC25t45872Z Brassica rapa HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
BraSC58t46415Z Brassica rapa HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
BraSC59t46597Z Brassica rapa HOM05D001033 ORTHO05D005438 2.9e-29 132.1 120 54.2
LjContig00318g0006081 Lotus japonicus HOM05D001033 ORTHO05D005438 3.7e-29 131.7 120 55.8
CARHR282060 Cardamine hirsuta HOM05D001033 ORTHO05D005438 6.4e-29 131.0 120 54.2
AL2G20690 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 8.3e-29 130.6 120 55.0
AL2G21100 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 8.3e-29 130.6 120 55.0
AL2G21480 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 8.3e-29 130.6 120 55.0
Thhalv10010825m.g Eutrema salsugineum HOM05D001033 ORTHO05D005438 8.3e-29 130.6 120 54.2
Medtr4g051245 Medicago truncatula HOM05D001033 ORTHO05D005438 1.1e-28 130.2 120 55.0
BolC7t41722H Brassica oleracea HOM05D001033 ORTHO05D005438 1.4e-28 129.8 120 54.2
PGR111G0123 Punica granatum HOM05D001033 ORTHO05D005438 1.8e-28 129.4 120 54.2
EL10As12g24023 Beta vulgaris HOM05D001033 ORTHO05D005438 3.2e-28 128.6 120 54.2
EL10As1g23050 Beta vulgaris HOM05D001033 ORTHO05D005438 3.2e-28 128.6 120 54.2
Lalb_Chr03g0039391 Lupinus albus HOM05D001033 ORTHO05D005438 3.2e-28 128.6 120 54.2
Lalb_Chr07g0192301 Lupinus albus HOM05D001033 ORTHO05D005438 3.2e-28 128.6 120 54.2
CAN.G397.97 Capsicum annuum HOM05D001033 ORTHO05D005438 7.0e-28 127.5 120 53.3
Potri.013G163000 Populus trichocarpa HOM05D001033 ORTHO05D005438 7.0e-28 127.5 120 53.3
DCAR_032489 Daucus carota HOM05D001033 ORTHO05D005438 9.2e-28 127.1 120 52.5
PSO548G0108 Papaver somniferum HOM05D001033 ORTHO05D005438 1.2e-27 126.7 120 54.2
CAN.G835.10 Capsicum annuum HOM05D001033 ORTHO05D005438 1.6e-27 126.3 120 52.5
Gohir.A09G102300 Gossypium hirsutum HOM05D001033 ORTHO05D005438 1.6e-27 126.3 120 53.3
SalBow1G1818 Salvia bowleyana HOM05D001033 ORTHO05D005438 1.6e-27 126.3 120 53.3
HanXRQChr00c0345g0573911 Helianthus annuus HOM05D001033 ORTHO05D005438 2.0e-27 125.9 120 53.3
HanXRQChr00c0759g0577221 Helianthus annuus HOM05D001033 ORTHO05D005438 2.0e-27 125.9 120 53.3
Nn010s41425 Nelumbo nucifera HOM05D001033 ORTHO05D005438 4.6e-27 124.8 120 54.2
Gohir.D04G084000 Gossypium hirsutum HOM05D001033 ORTHO05D005438 7.8e-27 124.0 119 52.9
HanXRQChr11g0348981 Helianthus annuus HOM05D001033 ORTHO05D005438 3.0e-26 122.1 120 50.8
BolC7t41667H Brassica oleracea HOM05D001033 ORTHO05D005438 3.9e-26 121.7 120 50.8
Gohir.D07G155048 Gossypium hirsutum HOM05D001033 ORTHO05D005438 2.8e-24 115.5 88 61.4
Eucgr.A02745 Eucalyptus grandis HOM05D001033 ORTHO05D005438 1.0e-23 113.6 113 50.4
Peaxi162Scf00334g01211 Petunia axillaris HOM05D001033 ORTHO05D002045 2.9e-21 105.5 109 48.6
Gohir.D12G053450 Gossypium hirsutum HOM05D001033 ORTHO05D005438 4.1e-20 101.7 106 49.1
Oeu028781.1 Olea europaea HOM05D001033 ORTHO05D005438 5.4e-20 101.3 112 48.2
HanXRQChr02g0044941 Helianthus annuus HOM05D001033 ORTHO05D002045 1.6e-19 99.8 109 47.7
HanXRQChr07g0201001 Helianthus annuus HOM05D001033 ORTHO05D002045 1.6e-19 99.8 109 47.7
HanXRQChr08g0210311 Helianthus annuus HOM05D001033 ORTHO05D002045 1.6e-19 99.8 109 47.7
HanXRQChr10g0283501 Helianthus annuus HOM05D001033 ORTHO05D002045 1.6e-19 99.8 109 47.7
HanXRQChr10g0289221 Helianthus annuus HOM05D001033 ORTHO05D002045 1.6e-19 99.8 109 47.7
HanXRQChr11g0326771 Helianthus annuus HOM05D001033 ORTHO05D002045 1.6e-19 99.8 109 47.7
HanXRQCPg0579981 Helianthus annuus HOM05D001033 ORTHO05D002045 1.6e-19 99.8 109 47.7
HanXRQChr00c0702g0576861 Helianthus annuus HOM05D001033 ORTHO05D002045 1.0e-18 97.1 106 48.1
Gohir.A10G087950 Gossypium hirsutum HOM05D001033 ORTHO05D005438 1.5e-17 93.2 88 50.0
C04p22580 Brassica napus HOM05D001033 ORTHO05D005438 1.9e-17 92.8 92 48.9
PGSC0003DMG400015304 Solanum tuberosum HOM05D001033 ORTHO05D005438 2.5e-17 92.4 69 63.8
HanXRQChr02g0041511 Helianthus annuus HOM05D001033 ORTHO05D002045 4.7e-16 88.2 95 48.4
Oeu015831.1 Olea europaea HOM05D001033 ORTHO05D005438 4.7e-16 88.2 69 60.9
HanXRQChr04g0118141 Helianthus annuus HOM05D001033 ORTHO05D005438 7.5e-14 80.9 67 56.7
Potri.007G062001 Populus trichocarpa HOM05D001325 ORTHO05D005438 2.2e-13 79.3 117 33.3
Gorai.013G158200 Gossypium raimondii HOM05D001033 ORTHO05D005438 3.2e-12 75.5 73 54.8
Ah.10g028160 Amaranthus hybridus HOM05D001325 ORTHO05D005438 7.1e-12 74.3 107 36.4
HanXRQChr02g0054851 Helianthus annuus HOM05D001033 ORTHO05D005438 7.1e-12 74.3 57 63.2
RcHm_v2.0_MTg0498381 Rosa chinensis HOM05D001325 ORTHO05D005438 7.1e-12 74.3 106 35.8
CsaV3_UNG208560 Cucumis sativus L. HOM05D001325 ORTHO05D005438 1.2e-11 73.6 106 36.8
SalBow1G5537 Salvia bowleyana HOM05D001325 ORTHO05D005438 1.2e-11 73.6 112 33.9
SalBow1G6489 Salvia bowleyana HOM05D001325 ORTHO05D005438 1.2e-11 73.6 112 33.9
SalBow1G6915 Salvia bowleyana HOM05D001325 ORTHO05D005438 1.2e-11 73.6 112 33.9
Atru.chr7.146 Acer truncatum HOM05D003067 ORTHO05D009378 1.6e-11 73.2 60 56.7
CANSAT25G2613 Cannabis sativa HOM05D001325 ORTHO05D005438 2.7e-11 72.4 94 37.2
Lj2A1221T109 Lonicera japonica HOM05D001325 ORTHO05D005438 2.7e-11 72.4 106 34.0
SHI36771 Sapria himalayana HOM05D001325 ORTHO05D001540 2.7e-11 72.4 106 35.8
SHI36782 Sapria himalayana HOM05D001325 ORTHO05D001540 2.7e-11 72.4 106 35.8
MSTRG.3526 Avicennia marina HOM05D001325 ORTHO05D005438 3.5e-11 72.0 112 33.0
CDE02G2710 Ceratophyllum demersum HOM05D001325 ORTHO05D001540 3.5e-11 72.0 107 36.4
HanXRQChr00c0055g0571461 Helianthus annuus HOM05D001325 ORTHO05D001540 4.6e-11 71.6 106 34.9
HanXRQMTg0579641 Helianthus annuus HOM05D001325 ORTHO05D001540 4.6e-11 71.6 106 34.9
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 4.6e-11 71.6 106 35.8
Pp3c21_8460 Physcomitrium patens HOM05D001325 ORTHO05D005438 4.6e-11 71.6 82 36.6
SHI54219 Sapria himalayana HOM05D001325 ORTHO05D001540 4.6e-11 71.6 86 38.4
Lsat_1_v5_gn_1_24001 Lactuca sativa HOM05D001325 ORTHO05D001540 1.0e-10 70.5 106 34.9
LjContig00315g0018892 Lotus japonicus HOM05D001325 ORTHO05D005438 1.0e-10 70.5 107 36.4
SHI38566 Sapria himalayana HOM05D001325 ORTHO05D001540 1.0e-10 70.5 106 35.8
SHI39812 Sapria himalayana HOM05D001325 ORTHO05D001540 1.0e-10 70.5 106 35.8
SHI49994 Sapria himalayana HOM05D001325 ORTHO05D001540 1.0e-10 70.5 106 35.8
SHI50801 Sapria himalayana HOM05D001325 ORTHO05D001540 1.0e-10 70.5 106 35.8
SHI51105 Sapria himalayana HOM05D001325 ORTHO05D005438 1.0e-10 70.5 106 35.8
SHI51700 Sapria himalayana HOM05D001325 ORTHO05D001540 1.0e-10 70.5 114 32.5
SHI53372 Sapria himalayana HOM05D001325 ORTHO05D001540 1.0e-10 70.5 106 35.8
HanXRQChr15g0488691 Helianthus annuus HOM05D001325 ORTHO05D005438 1.3e-10 70.1 106 33.0
PGR028G0020 Punica granatum HOM05D001325 ORTHO05D005438 1.3e-10 70.1 106 35.8
SHI39777 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-10 70.1 105 35.2
SHI46090 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-10 70.1 107 34.6
SHI53190 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-10 70.1 79 38.0
Lalb_Chr00c24g0406971 Lupinus albus HOM05D001325 ORTHO05D005438 1.7e-10 69.7 107 36.4
Lalb_Chr17g0337401 Lupinus albus HOM05D001325 ORTHO05D005438 1.7e-10 69.7 107 36.4
Solyc00g500225.1 Solanum lycopersicum HOM05D001325 ORTHO05D005438 1.7e-10 69.7 79 38.0
Solyc00g500361.1 Solanum lycopersicum HOM05D001325 ORTHO05D011137 1.7e-10 69.7 79 38.0
BolC7t45240H Brassica oleracea HOM05D001033 ORTHO05D005438 2.3e-10 69.3 57 63.2
SHI54160 Sapria himalayana HOM05D001325 ORTHO05D001540 2.3e-10 69.3 107 33.6
Sc04g0005510 Simmondsia chinensis HOM05D001325 ORTHO05D005438 2.3e-10 69.3 106 34.9
SHI35326 Sapria himalayana HOM05D001325 ORTHO05D001540 3.0e-10 68.9 106 36.8
SHI36581 Sapria himalayana HOM05D001325 ORTHO05D001540 3.0e-10 68.9 106 34.9
DCAR_032435 Daucus carota HOM05D001325 ORTHO05D005438 3.9e-10 68.6 107 33.6
Peaxi162Scf00588g00111 Petunia axillaris HOM05D001325 ORTHO05D005438 3.9e-10 68.6 79 38.0
SHI46908 Sapria himalayana HOM05D001325 ORTHO05D001540 3.9e-10 68.6 106 34.9
SHI51228 Sapria himalayana HOM05D001325 ORTHO05D001540 3.9e-10 68.6 106 34.9
Gohir.D02G106150 Gossypium hirsutum HOM05D001033 ORTHO05D005438 5.1e-10 68.2 112 37.5
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 5.1e-10 68.2 113 35.4
Medtr0082s0040 Medicago truncatula HOM05D001325 ORTHO05D001540 5.1e-10 68.2 94 36.2
Nitab4.5_0001788g0340 Nicotiana tabacum HOM05D001325 ORTHO05D005438 5.1e-10 68.2 83 36.1
SHI27348 Sapria himalayana HOM05D001325 ORTHO05D005438 5.1e-10 68.2 106 34.9
SHI36383 Sapria himalayana HOM05D001325 ORTHO05D001540 5.1e-10 68.2 106 34.9
Solyc00g500115.1 Solanum lycopersicum HOM05D001325 ORTHO05D005438 5.1e-10 68.2 107 34.6
arahy.Tifrunner.gnm1.ann1.2YD7KU Arachis hypogaea HOM05D001325 ORTHO05D001540 6.6e-10 67.8 112 33.0
arahy.Tifrunner.gnm1.ann1.KX3NGM Arachis hypogaea HOM05D001325 ORTHO05D001540 6.6e-10 67.8 112 33.0
arahy.Tifrunner.gnm1.ann1.Q8C5RR Arachis hypogaea HOM05D001325 ORTHO05D005438 6.6e-10 67.8 112 33.0
arahy.Tifrunner.gnm1.ann1.TPY4ZQ Arachis hypogaea HOM05D001325 ORTHO05D001540 6.6e-10 67.8 112 33.0
arahy.Tifrunner.gnm1.ann1.XXM48B Arachis hypogaea HOM05D001325 ORTHO05D001540 6.6e-10 67.8 112 33.0
Peaxi162Scf00625g00027 Petunia axillaris HOM05D000743 ORTHO05D000580 6.6e-10 67.8 107 33.6
SHI42503 Sapria himalayana HOM05D001325 ORTHO05D001540 6.6e-10 67.8 86 36.0
SHI44576 Sapria himalayana HOM05D001325 ORTHO05D001540 6.6e-10 67.8 79 36.7
Solyc00g500261.1 Solanum lycopersicum HOM05D001325 ORTHO05D005438 6.6e-10 67.8 107 33.6
SHI50625 Sapria himalayana HOM05D001325 ORTHO05D001540 8.6e-10 67.4 114 30.7
SHI51612 Sapria himalayana HOM05D001325 ORTHO05D001540 8.6e-10 67.4 79 36.7
AL3G44430 Arabidopsis lyrata HOM05D001325 ORTHO05D005438 1.1e-09 67.0 95 34.7
AT2G07751 Arabidopsis thaliana HOM05D001325 ORTHO05D005438 1.1e-09 67.0 95 34.7
ATMG00990 Arabidopsis thaliana HOM05D001325 ORTHO05D005438 1.1e-09 67.0 95 34.7
BolSC28t60356H Brassica oleracea HOM05D001325 ORTHO05D005438 1.1e-09 67.0 95 34.7
BraSC48t46255Z Brassica rapa HOM05D001325 ORTHO05D005438 1.1e-09 67.0 95 34.7
BraSC77t46664Z Brassica rapa HOM05D001325 ORTHO05D005438 1.1e-09 67.0 95 34.7
CARHR283250 Cardamine hirsuta HOM05D001325 ORTHO05D005438 1.1e-09 67.0 95 34.7
BNapus_Darmor_BZH_scaffold_287p00100 Brassica napus HOM05D001033 ORTHO05D005438 1.5e-09 66.6 78 42.3
Lalb_Chr01g0022761 Lupinus albus HOM05D001033 ORTHO05D005438 1.5e-09 66.6 64 51.6
Nn4g22664 Nelumbo nucifera HOM05D001033 ORTHO05D005438 1.5e-09 66.6 57 56.1
SHI36966 Sapria himalayana HOM05D001325 ORTHO05D005438 1.9e-09 66.2 107 33.6
BNapus_Darmor_BZH_scaffold_253p00180 Brassica napus HOM05D001033 ORTHO05D005438 2.5e-09 65.9 71 45.1
SHI43970 Sapria himalayana HOM05D001325 ORTHO05D001540 2.5e-09 65.9 86 34.9
SHI49748 Sapria himalayana HOM05D001325 ORTHO05D001540 2.5e-09 65.9 86 34.9
CAN.G266.7 Capsicum annuum HOM05D001325 ORTHO05D005438 3.3e-09 65.5 106 29.2
Nitab4.5_0001796g0230 Nicotiana tabacum HOM05D001325 ORTHO05D005438 4.3e-09 65.1 79 36.7
Ca_29290_v3 Cicer arietinum L. HOM05D001033 ORTHO05D005438 5.6e-09 64.7 76 40.8
Nitab4.5_0005853g0080 Nicotiana tabacum HOM05D001325 ORTHO05D001540 5.6e-09 64.7 77 36.4
MBI10_g41320_MAGBIO Magnolia biondii HOM05D001325 ORTHO05D005438 7.3e-09 64.3 73 38.4
Nitab4.5_0000172g0980 Nicotiana tabacum HOM05D001325 ORTHO05D005438 7.3e-09 64.3 79 36.7
SHI35457 Sapria himalayana HOM05D001325 ORTHO05D005438 7.3e-09 64.3 106 34.0
Cpa.g.sc87.115 Carica papaya HOM05D001325 ORTHO05D005438 9.5e-09 63.9 104 32.7
SHI36629 Sapria himalayana HOM05D001325 ORTHO05D001540 9.5e-09 63.9 77 35.1
Medtr3g035740 Medicago truncatula HOM05D001033 ORTHO05D005438 1.2e-08 63.5 68 47.1
SHI34630 Sapria himalayana HOM05D001325 ORTHO05D001540 1.2e-08 63.5 106 34.0
SHI54131 Sapria himalayana HOM05D001325 ORTHO05D001540 1.2e-08 63.5 81 39.5
MD11G1295600 Malus domestica HOM05D001033 ORTHO05D005438 1.6e-08 63.2 49 55.1
SHI33930 Sapria himalayana HOM05D001325 ORTHO05D001540 1.6e-08 63.2 103 33.0
SHI49663 Sapria himalayana HOM05D001325 ORTHO05D001540 3.6e-08 62.0 101 31.7
Migut.D01355 Erythranthe guttata HOM05D001033 ORTHO05D005438 4.7e-08 61.6 73 47.9
SHI35334 Sapria himalayana HOM05D001325 ORTHO05D001540 4.7e-08 61.6 106 33.0
Nitab4.5_0000844g0170 Nicotiana tabacum HOM05D001325 ORTHO05D005438 6.2e-08 61.2 77 35.1
Solyc01g017210.1 Solanum lycopersicum HOM05D001033 ORTHO05D005438 6.2e-08 61.2 57 52.6
SHI50386 Sapria himalayana HOM05D001325 ORTHO05D005438 8.1e-08 60.8 107 30.8
SHI35190 Sapria himalayana HOM05D001325 ORTHO05D001540 1.4e-07 60.1 86 36.0
EL10As15g24122 Beta vulgaris HOM05D001033 ORTHO05D005438 2.3e-07 59.3 57 54.4
Gorai.005G120500 Gossypium raimondii HOM05D001033 ORTHO05D005438 2.3e-07 59.3 106 36.8
Lalb_Chr03g0038871 Lupinus albus HOM05D001325 ORTHO05D005438 2.3e-07 59.3 107 34.6
Nitab4.5_0000172g1710 Nicotiana tabacum HOM05D001325 ORTHO05D005438 8.9e-07 57.4 77 33.8
arahy.Tifrunner.gnm1.ann1.SP1EBN Arachis hypogaea HOM05D001033 ORTHO05D005438 1.5e-06 56.6 46 58.7
SHI48150 Sapria himalayana HOM05D001325 ORTHO05D001540 1.5e-06 56.6 76 34.2
MD03G1163700 Malus domestica HOM05D001033 ORTHO05D005438 2.6e-06 55.8 52 53.8
SHI40932 Sapria himalayana HOM05D001325 ORTHO05D005438 3.4e-06 55.5 108 29.6
Nitab4.5_0005637g0100 Nicotiana tabacum HOM05D001033 ORTHO05D002045 7.6e-06 54.3 40 62.5


User provided reference genes

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