Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 2.9e-81 305.1 145 100.0
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 4.8e-31 138.3 99 65.7
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 4.8e-31 138.3 99 65.7
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 4.8e-31 138.3 99 65.7
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 1.1e-30 137.1 99 64.6
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 1.4e-30 136.7 99 64.6
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 1.4e-30 136.7 99 64.6
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 2.4e-30 136.0 114 58.8
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 2.4e-30 136.0 114 58.8
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 2.4e-30 136.0 114 58.8
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 2.6e-29 132.5 99 62.6
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 3.4e-29 132.1 101 64.4
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 3.4e-29 132.1 101 64.4
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 3.4e-29 132.1 101 64.4
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 3.4e-29 132.1 101 64.4
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 3.4e-29 132.1 101 64.4
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 3.4e-29 132.1 101 64.4
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 3.4e-29 132.1 101 64.4
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 3.4e-29 132.1 101 64.4
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 3.4e-29 132.1 99 62.6
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 4.5e-29 131.7 99 64.6
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 4.5e-29 131.7 99 63.6
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 4.5e-29 131.7 99 62.6
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 64.6
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 64.6
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 62.6
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 62.6
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 62.6
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 62.6
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 62.6
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 62.6
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 62.6
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 62.6
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 62.6
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 7.6e-29 131.0 99 62.6
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 9.9e-29 130.6 99 63.6
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 9.9e-29 130.6 99 62.6
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 9.9e-29 130.6 99 62.6
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 9.9e-29 130.6 99 62.6
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 9.9e-29 130.6 99 62.6
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 9.9e-29 130.6 99 62.6
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 1.3e-28 130.2 99 62.6
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.7e-28 129.8 99 62.6
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 2.9e-28 129.0 99 61.6
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 3.8e-28 128.6 99 61.6
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 3.8e-28 128.6 99 60.6
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 3.8e-28 128.6 99 60.6
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 6.4e-28 127.9 99 59.6
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 1.1e-27 127.1 99 62.6
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 1.1e-27 127.1 99 62.6
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.2e-27 125.6 99 61.6
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 4.2e-27 125.2 99 60.6
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 5.5e-27 124.8 99 60.6
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 7.1e-27 124.4 99 60.6
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 9.3e-27 124.0 95 65.3
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 1.2e-26 123.6 99 61.6
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 7.9e-26 120.9 98 62.2
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 1.8e-25 119.8 99 58.6
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 2.3e-25 119.4 99 59.6
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 3.9e-25 118.6 97 58.8
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 3.9e-25 118.6 99 59.6
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 8.7e-25 117.5 93 63.4
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.1e-24 117.1 99 56.6
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.5e-24 115.9 98 57.1
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 4.3e-24 115.2 87 62.1
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 5.6e-24 114.8 99 58.6
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 1.3e-23 113.6 101 53.5
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 3.7e-23 112.1 90 60.0
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 6.2e-23 111.3 86 62.8
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 8.2e-23 110.9 90 60.0
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 6.9e-22 107.8 74 63.5
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 2.2e-20 102.8 97 51.5
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 4.9e-20 101.7 93 53.8
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 4.9e-20 101.7 99 53.5
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 8.4e-20 100.9 95 54.7
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 8.4e-20 100.9 70 64.3
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 2.7e-18 95.9 73 61.6
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 3.5e-18 95.5 84 56.0
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 4.6e-18 95.1 77 59.7
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 6.0e-18 94.7 92 52.2
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 5.1e-17 91.7 55 74.5
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 9.7e-16 87.4 56 67.9
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.3e-15 87.0 68 63.2
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 4.8e-15 85.1 64 62.5
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 2.9e-12 75.9 50 68.0
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 3.8e-12 75.5 71 53.5
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 2.1e-10 69.7 53 64.2
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 4.6e-10 68.6 91 46.2
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 4.6e-10 68.6 53 62.3
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 5.1e-09 65.1 89 46.1
HanXRQChr16g0506261 Helianthus annuus HOM05D000388 ORTHO05D009843 2.0e-08 63.2 58 53.4
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 2.2e-07 59.7 89 41.6
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 2.8e-07 59.3 89 41.6
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 6.3e-07 58.2 89 39.3
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 6.3e-07 58.2 89 39.3
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 8.2e-07 57.8 55 52.7
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 8.2e-07 57.8 112 33.0
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 8.2e-07 57.8 89 39.3
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.1e-06 57.4 89 40.4
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.4e-06 57.0 89 38.2
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.4e-06 57.0 107 36.4
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 1.4e-06 57.0 93 37.6
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 2.4e-06 56.2 86 38.4
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 5.3e-06 55.1 92 38.0
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 6.9e-06 54.7 55 50.9
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 9.1e-06 54.3 61 45.9
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 9.1e-06 54.3 95 36.8


User provided reference genes

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