Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO086G0016 Selaginella moellendorffii HOM05D007371 ORTHO05D009319 2.2e-100 369.0 191 100.0
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 3.6e-26 122.5 176 46.6
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 6.1e-26 121.7 176 46.6
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.4e-25 120.6 176 46.6
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 1.4e-25 120.6 176 45.5
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.8e-25 120.2 176 45.5
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 5.2e-25 118.6 176 46.0
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 8.8e-25 117.9 176 45.5
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 8.8e-25 117.9 176 45.5
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 8.8e-25 117.9 176 45.5
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 8.8e-25 117.9 176 45.5
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 8.8e-25 117.9 176 45.5
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 8.8e-25 117.9 176 45.5
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 8.8e-25 117.9 176 45.5
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 1.1e-24 117.5 176 45.5
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.4e-24 115.5 176 44.3
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.4e-24 115.5 176 44.3
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.4e-24 115.5 176 44.3
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 5.7e-24 115.2 176 45.5
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 5.7e-24 115.2 176 44.3
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.3
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 7.4e-24 114.8 176 44.9
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 9.7e-24 114.4 170 44.1
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 2.2e-23 113.2 176 44.3
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 2.2e-23 113.2 176 44.3
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 2.2e-23 113.2 176 44.3
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 2.8e-23 112.8 176 43.8
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.8e-23 112.8 176 44.3
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 2.8e-23 112.8 176 44.3
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 3.7e-23 112.5 176 43.2
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 3.7e-23 112.5 176 43.2
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 4.8e-23 112.1 176 45.5
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 4.8e-23 112.1 176 45.5
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 4.8e-23 112.1 176 45.5
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 7.0e-22 108.2 170 44.1
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 1.6e-21 107.1 162 45.1
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 1.0e-20 104.4 176 42.6
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 2.2e-20 103.2 180 42.8
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 2.2e-20 103.2 180 42.8
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 2.9e-20 102.8 180 42.8
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 2.9e-20 102.8 176 43.8
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 3.8e-20 102.4 176 42.6
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 6.5e-20 101.7 176 42.6
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 6.7e-17 91.7 151 41.7
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 6.7e-17 91.7 123 46.3
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.2e-16 90.9 123 46.3
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 5.7e-16 88.6 123 45.5
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 3.7e-15 85.9 176 40.3
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 1.3e-12 77.4 108 45.4
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.3e-12 77.4 107 48.6
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 1.7e-12 77.0 103 47.6
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 3.8e-12 75.9 118 39.8
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 5.0e-12 75.5 106 45.3
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 5.0e-12 75.5 106 45.3
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 5.0e-12 75.5 106 45.3
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 5.0e-12 75.5 106 45.3
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 6.5e-12 75.1 123 43.9
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 6.5e-12 75.1 115 40.9
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 8.5e-12 74.7 158 38.0
Mapoly0048s0040 Marchantia polymorpha HOM05D007371 ORTHO05D009319 3.2e-11 72.8 101 46.5
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 3.6e-10 69.3 119 42.0
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.8e-09 67.0 84 47.6
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 2.3e-09 66.6 98 43.9
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 2.0e-08 63.5 98 41.8
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 2.0e-08 63.5 99 42.4
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 5.7e-08 62.0 110 40.9
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 5.7e-08 62.0 82 45.1
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.8e-07 59.7 125 34.4
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 4.8e-07 58.9 80 47.5
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 1.1e-06 57.8 79 48.1
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 1.1e-06 57.8 93 40.9
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-06 57.8 87 44.8
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 3.1e-06 56.2 86 43.0


User provided reference genes

Program Settings