Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.2e-214 748.0 353 100.0
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.8e-100 370.2 320 53.4
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 8.4e-98 361.3 318 54.7
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.1e-97 360.9 318 54.4
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.4e-97 360.5 318 54.4
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.9e-97 360.1 318 54.4
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.9e-97 360.1 318 54.4
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 2.5e-97 359.8 318 54.1
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 4.2e-97 359.0 318 54.1
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 5.5e-97 358.6 318 54.1
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 5.5e-97 358.6 318 54.4
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.5e-97 358.6 316 54.4
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.2e-96 357.5 318 53.8
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.6e-96 357.1 320 52.8
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.6e-96 357.1 322 53.4
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.6e-96 357.1 318 53.8
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 2.1e-96 356.7 318 53.8
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 3.5e-96 355.9 318 52.8
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 3.5e-96 355.9 318 53.5
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.6e-96 355.5 328 51.5
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 4.6e-96 355.5 325 51.7
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 4.6e-96 355.5 318 53.8
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 6.0e-96 355.1 321 52.3
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 6.0e-96 355.1 321 52.3
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 7.9e-96 354.8 318 53.8
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 7.9e-96 354.8 318 53.1
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 7.9e-96 354.8 321 53.3
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.0e-95 354.4 318 53.8
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 1.0e-95 354.4 321 52.3
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.3e-95 354.0 318 53.5
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.3e-95 354.0 321 52.3
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.3e-95 354.0 318 54.1
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.3e-95 353.2 313 54.3
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 2.3e-95 353.2 318 53.1
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 2.3e-95 353.2 318 53.5
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 2.3e-95 353.2 318 53.5
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.3e-95 353.2 318 52.5
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 3.0e-95 352.8 318 52.2
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 3.9e-95 352.4 322 53.1
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 3.9e-95 352.4 320 52.2
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 5.1e-95 352.1 318 53.5
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 5.1e-95 352.1 315 53.3
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 5.1e-95 352.1 318 52.2
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 5.1e-95 352.1 318 52.2
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 6.7e-95 351.7 318 53.5
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 6.7e-95 351.7 318 52.8
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 6.7e-95 351.7 319 51.4
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 6.7e-95 351.7 318 52.8
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 6.7e-95 351.7 321 51.7
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 6.7e-95 351.7 318 53.8
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 8.7e-95 351.3 320 52.2
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 8.7e-95 351.3 318 52.5
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.1e-94 350.9 318 52.2
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 1.5e-94 350.5 318 53.5
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.5e-94 350.5 320 51.9
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.9e-94 350.1 318 51.3
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.9e-94 350.1 316 51.6
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 2.5e-94 349.7 318 52.5
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 2.5e-94 349.7 318 52.5
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.3e-94 349.4 318 53.1
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 4.3e-94 349.0 319 53.0
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 4.3e-94 349.0 319 53.0
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 4.3e-94 349.0 312 52.2
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 4.3e-94 349.0 318 52.8
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 5.7e-94 348.6 318 51.9
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 5.7e-94 348.6 318 51.9
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 5.7e-94 348.6 318 51.6
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 7.4e-94 348.2 318 52.2
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 9.6e-94 347.8 318 52.2
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 9.6e-94 347.8 317 51.7
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 1.3e-93 347.4 319 52.7
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 1.3e-93 347.4 318 52.2
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.3e-93 347.4 318 52.5
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 1.6e-93 347.1 319 52.7
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.6e-93 347.1 313 53.0
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.6e-93 347.1 318 52.8
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 1.6e-93 347.1 320 51.2
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 2.1e-93 346.7 318 52.2
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 2.1e-93 346.7 318 53.1
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 2.8e-93 346.3 319 52.7
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 2.8e-93 346.3 318 51.6
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.8e-93 346.3 318 51.6
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 2.8e-93 346.3 318 51.3
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 3.7e-93 345.9 316 51.6
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 4.8e-93 345.5 318 52.8
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 6.3e-93 345.1 318 52.8
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 8.2e-93 344.7 337 50.4
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 1.1e-92 344.4 319 52.0
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.4e-92 344.0 318 50.9
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.4e-92 344.0 318 52.5
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.8e-92 343.6 318 51.3
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.8e-92 343.6 319 52.0
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 1.8e-92 343.6 318 52.8
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.8e-92 343.6 318 52.5
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.8e-92 343.6 318 51.3
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.8e-92 343.6 320 51.2
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 2.4e-92 343.2 316 52.5
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.4e-92 343.2 318 52.2
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 2.4e-92 343.2 318 52.2
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 4.1e-92 342.4 318 50.6
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 5.3e-92 342.0 318 52.8
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 6.9e-92 341.7 318 51.9
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 6.9e-92 341.7 318 52.2
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 9.0e-92 341.3 318 50.6
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 2.0e-91 340.1 301 53.8
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 2.6e-91 339.7 314 51.0
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 3.4e-91 339.3 318 51.6
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 4.5e-91 339.0 318 50.6
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 7.6e-91 338.2 318 51.9
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 1.0e-90 337.8 308 52.3
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.3e-90 337.4 316 50.6
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.2e-90 336.7 318 50.0
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.2e-90 336.7 320 50.3
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 3.8e-90 335.9 318 49.1
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 5.0e-90 335.5 318 49.7
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 5.0e-90 335.5 318 49.7
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.9e-89 333.6 318 49.1
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 2.5e-89 333.2 318 50.6
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.3e-87 326.6 316 50.0
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 5.1e-87 325.5 321 49.8
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 8.7e-87 324.7 320 48.4
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 2.5e-86 323.2 388 43.6
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 2.5e-86 323.2 287 54.0
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 7.4e-86 321.6 316 48.7
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 9.7e-86 321.2 316 49.4
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 1.6e-85 320.5 322 49.4
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.1e-84 316.2 318 47.8
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.4e-83 312.8 287 51.6
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.0e-82 311.2 289 51.6
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 2.2e-82 310.1 290 49.7
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.1e-81 307.8 286 52.1
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 6.9e-76 288.5 319 46.4
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 2.2e-74 283.5 266 52.3
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 1.2e-67 261.2 226 54.0
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.8e-66 256.1 226 54.0
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 2.9e-58 229.9 179 58.1
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.8e-58 229.6 178 59.0
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 3.2e-57 226.5 178 57.9
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.7e-45 187.6 151 57.6
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.9e-33 147.5 175 45.7
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 1.5e-30 137.9 139 48.2
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 7.5e-30 135.6 109 55.0
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.1e-25 121.7 140 41.4
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.6e-24 117.9 118 45.8
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 4.7e-24 116.3 127 46.5
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 5.8e-22 109.4 121 42.1
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.2e-16 91.7 84 52.4
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 1.6e-16 91.3 113 45.1
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.8e-16 90.5 84 51.2
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 1.9e-09 67.8 92 39.1


User provided reference genes

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