Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.1e-136 490.0 241 100.0
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 4.4e-122 441.4 244 92.2
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 6.4e-73 278.1 251 53.4
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 3.0e-70 269.2 255 52.2
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 6.6e-70 268.1 261 51.3
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 6.6e-70 268.1 261 51.3
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 6.6e-70 268.1 261 51.3
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.9e-69 266.5 259 50.2
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 4.0e-67 258.8 248 52.8
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.4e-64 250.4 247 51.0
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.4e-64 249.6 248 50.8
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.2e-64 248.8 248 50.8
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 4.2e-64 248.8 246 49.6
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 9.3e-64 247.7 250 50.8
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 2.1e-63 246.5 252 50.8
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 2.7e-63 246.1 248 51.2
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 3.5e-63 245.7 249 51.4
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 6.0e-63 245.0 249 51.0
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 7.9e-63 244.6 249 50.6
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 1.0e-62 244.2 246 49.2
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 1.3e-62 243.8 249 50.6
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.7e-62 243.4 247 51.0
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 6.6e-62 241.5 249 49.8
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 1.5e-61 240.4 248 47.6
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.5e-61 240.4 244 49.6
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 2.5e-61 239.6 250 49.6
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 2.5e-61 239.6 249 51.0
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 9.6e-61 237.7 245 49.8
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 9.6e-61 237.7 246 50.4
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 9.6e-61 237.7 249 49.8
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.3e-60 237.3 245 50.6
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.6e-60 236.9 247 46.2
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 2.8e-60 236.1 247 46.2
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 3.6e-60 235.7 247 46.2
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 8.1e-60 234.6 247 46.2
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 1.4e-59 233.8 249 48.2
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 1.8e-59 233.4 244 48.8
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 1.8e-59 233.4 249 47.8
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 2.4e-59 233.0 250 48.0
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 3.1e-59 232.6 244 48.8
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.1e-59 232.6 287 45.3
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 6.9e-59 231.5 244 49.6
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 6.9e-59 231.5 214 53.7
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 6.9e-59 231.5 248 48.4
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 9.0e-59 231.1 248 48.4
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 9.0e-59 231.1 246 48.8
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 9.0e-59 231.1 249 48.2
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.5e-58 230.3 246 46.3
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 1.5e-58 230.3 244 48.0
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.0e-58 229.9 246 46.3
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 3.4e-58 229.2 247 47.0
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 4.5e-58 228.8 260 45.4
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 4.5e-58 228.8 248 48.4
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 4.5e-58 228.8 261 46.4
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 5.8e-58 228.4 248 47.6
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.6e-58 228.0 251 47.4
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 7.6e-58 228.0 249 48.2
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 9.9e-58 227.6 246 45.9
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.3e-57 227.3 248 48.8
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 2.2e-57 226.5 248 47.6
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 4.9e-57 225.3 246 46.7
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 4.9e-57 225.3 246 46.7
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 6.4e-57 224.9 249 46.2
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 6.4e-57 224.9 250 45.2
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 6.4e-57 224.9 235 46.4
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 8.4e-57 224.6 247 47.4
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.1e-56 224.2 245 46.9
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.1e-56 224.2 265 44.5
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.4e-56 223.8 245 46.9
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.4e-56 223.8 246 48.0
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.9e-56 223.4 245 46.9
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 2.4e-56 223.0 244 46.3
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.4e-56 223.0 250 44.8
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 5.5e-56 221.9 245 46.1
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 5.5e-56 221.9 249 47.8
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 5.5e-56 221.9 247 47.0
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 5.5e-56 221.9 248 46.8
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 9.3e-56 221.1 245 46.1
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.2e-55 220.7 250 48.4
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.2e-55 220.7 246 48.8
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 1.2e-55 220.7 247 45.7
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 1.6e-55 220.3 278 44.2
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 2.1e-55 219.9 248 44.8
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 3.5e-55 219.2 247 44.9
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 3.5e-55 219.2 246 46.3
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 4.6e-55 218.8 250 46.0
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 4.6e-55 218.8 279 44.4
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 1.8e-54 216.9 243 47.3
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 2.5e-53 213.0 246 45.5
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.3e-53 212.6 248 44.8
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 7.4e-53 211.5 246 44.7
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 9.6e-53 211.1 260 45.0
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 3.7e-52 209.1 248 45.6
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.4e-51 207.2 246 42.7
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.8e-51 206.8 253 47.0
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 2.4e-51 206.5 247 44.5
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 5.3e-51 205.3 248 44.8
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 6.9e-51 204.9 257 45.1
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 1.2e-50 204.1 257 44.7
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.5e-50 203.8 249 46.2
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.2e-49 199.9 249 45.8
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 1.9e-48 196.8 247 41.7
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 9.3e-48 194.5 249 45.0
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.6e-47 193.7 247 41.7
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 3.0e-46 189.5 248 42.7
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 8.7e-46 188.0 246 42.7
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 7.4e-45 184.9 249 43.0
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 6.3e-44 181.8 170 52.4
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 5.3e-43 178.7 216 46.3
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.5e-42 177.2 241 41.1
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 4.5e-42 175.6 267 39.7
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 7.6e-42 174.9 169 51.5
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 5.0e-41 172.2 236 41.1
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 7.9e-39 164.9 212 40.6
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 2.3e-38 163.3 247 38.1
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.4e-35 153.3 164 47.0
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 6.9e-35 151.8 183 41.5
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.2e-34 151.0 263 34.6
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.0e-29 133.7 133 50.4
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 6.5e-25 118.6 202 34.2
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 9.4e-24 114.8 127 45.7
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 4.4e-21 105.9 95 50.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.4e-19 100.1 279 26.9
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 1.2e-13 81.3 137 32.1
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 3.1e-11 73.2 54 57.4
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 9.1e-11 71.6 49 65.3
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.7e-10 70.1 96 37.5
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 5.5e-08 62.4 105 36.2


User provided reference genes

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