Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.5e-103 379.4 181 100.0
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.9e-46 189.1 137 74.5
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 3.8e-46 188.7 181 63.5
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 7.8e-39 164.5 210 49.0
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 1.0e-38 164.1 182 54.9
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 1.7e-38 163.3 181 55.2
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.7e-38 163.3 182 55.5
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 2.3e-38 162.9 188 54.3
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 2.3e-38 162.9 182 54.9
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 2.9e-38 162.5 184 52.2
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 2.9e-38 162.5 182 54.4
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 3.9e-38 162.2 182 54.9
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 3.9e-38 162.2 182 54.9
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 3.9e-38 162.2 182 54.9
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 5.0e-38 161.8 182 53.8
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 5.0e-38 161.8 188 53.2
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 5.0e-38 161.8 182 54.9
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 6.6e-38 161.4 182 53.8
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 6.6e-38 161.4 182 54.9
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 6.6e-38 161.4 182 54.9
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 6.6e-38 161.4 182 54.9
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 1.1e-37 160.6 193 52.8
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 1.5e-37 160.2 184 52.7
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 1.9e-37 159.8 186 54.3
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 2.5e-37 159.5 179 52.0
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 2.5e-37 159.5 186 53.2
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 2.5e-37 159.5 186 54.3
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 2.5e-37 159.5 182 54.4
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 3.3e-37 159.1 182 54.4
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 3.3e-37 159.1 186 54.3
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 5.6e-37 158.3 182 54.4
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 5.6e-37 158.3 182 53.3
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 5.6e-37 158.3 182 53.3
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 5.6e-37 158.3 182 53.8
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 5.6e-37 158.3 182 53.8
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 7.3e-37 157.9 182 53.8
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 7.3e-37 157.9 186 52.2
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 7.3e-37 157.9 182 53.8
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 7.3e-37 157.9 185 52.4
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 7.3e-37 157.9 182 53.3
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 7.3e-37 157.9 182 53.8
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 7.3e-37 157.9 185 54.6
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 7.3e-37 157.9 180 51.7
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 7.3e-37 157.9 182 53.3
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 9.5e-37 157.5 182 53.3
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 9.5e-37 157.5 186 53.8
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 9.5e-37 157.5 186 51.6
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 1.2e-36 157.1 182 53.8
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 1.2e-36 157.1 182 53.3
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 1.2e-36 157.1 182 52.7
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.6e-36 156.8 182 53.8
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 1.6e-36 156.8 182 53.8
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 1.6e-36 156.8 186 51.6
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.6e-36 156.8 186 51.6
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.6e-36 156.8 186 51.6
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 1.6e-36 156.8 182 52.7
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 2.1e-36 156.4 183 53.6
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 2.1e-36 156.4 182 53.3
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 2.1e-36 156.4 182 53.3
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 2.8e-36 156.0 182 52.2
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 2.8e-36 156.0 182 52.7
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 2.8e-36 156.0 182 52.7
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 2.8e-36 156.0 182 52.7
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 2.8e-36 156.0 186 51.6
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 2.8e-36 156.0 186 52.2
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 3.6e-36 155.6 208 49.5
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 3.6e-36 155.6 183 50.8
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 4.7e-36 155.2 186 52.2
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 4.7e-36 155.2 185 53.0
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 4.7e-36 155.2 180 52.2
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 6.1e-36 154.8 198 49.5
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 8.0e-36 154.5 182 52.2
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 8.0e-36 154.5 182 52.2
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 8.0e-36 154.5 181 51.4
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 8.0e-36 154.5 182 51.6
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-35 153.7 140 60.0
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 1.8e-35 153.3 182 51.1
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 1.8e-35 153.3 182 52.7
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 2.3e-35 152.9 182 50.5
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 3.1e-35 152.5 186 52.2
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 3.1e-35 152.5 182 52.7
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 3.1e-35 152.5 180 51.1
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 3.1e-35 152.5 187 49.7
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 4.0e-35 152.1 180 51.7
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 4.0e-35 152.1 146 58.2
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 4.0e-35 152.1 146 58.2
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 5.2e-35 151.8 183 51.4
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 5.2e-35 151.8 183 49.7
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 5.2e-35 151.8 183 49.7
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 5.2e-35 151.8 186 51.6
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 6.8e-35 151.4 183 51.9
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 6.8e-35 151.4 149 57.7
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 6.8e-35 151.4 199 49.2
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 6.8e-35 151.4 182 51.6
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 8.9e-35 151.0 183 51.9
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 8.9e-35 151.0 182 50.5
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 1.2e-34 150.6 187 49.2
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 1.2e-34 150.6 186 51.1
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 2.0e-34 149.8 186 51.1
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 5.8e-34 148.3 186 50.5
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 5.8e-34 148.3 186 50.5
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 7.5e-34 147.9 186 50.5
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 7.5e-34 147.9 186 50.5
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 7.5e-34 147.9 186 51.1
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 9.8e-34 147.5 191 49.7
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 9.8e-34 147.5 191 49.7
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.3e-33 147.1 186 50.5
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 1.3e-33 147.1 186 50.5
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.3e-33 147.1 186 50.5
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 1.3e-33 147.1 186 50.5
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 2.2e-33 146.4 183 50.8
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 2.2e-33 146.4 183 50.8
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 2.2e-33 146.4 189 49.7
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 2.2e-33 146.4 180 50.0
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 2.9e-33 146.0 186 50.5
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 2.9e-33 146.0 183 50.3
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 3.7e-33 145.6 179 48.0
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 4.9e-33 145.2 183 50.3
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 4.9e-33 145.2 183 50.3
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 6.4e-33 144.8 183 50.3
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 6.4e-33 144.8 183 50.3
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 9.2e-32 141.0 180 48.3
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 6.6e-30 134.8 151 51.0
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 4.3e-29 132.1 134 54.5
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 1.2e-26 124.0 182 46.2
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 1.2e-26 124.0 181 43.1
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 3.4e-26 122.5 174 42.5
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 4.1e-24 115.5 107 62.6
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 3.5e-23 112.5 138 48.6
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.0e-22 110.9 107 60.7
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 8.6e-22 107.8 107 60.7
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 9.5e-21 104.4 137 49.6
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 5.2e-19 98.6 182 41.2
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 1.2e-18 97.4 63 73.0
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.6e-18 96.3 107 52.3
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.9e-17 92.8 43 97.7
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.4e-16 90.5 115 47.0
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 1.2e-12 77.4 106 50.0
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 6.2e-12 75.1 51 72.5
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 6.2e-12 75.1 182 34.6
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.2e-10 70.9 111 45.0
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 7.1e-08 61.6 74 51.4
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 3.5e-07 59.3 70 45.7
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 1.7e-06 57.0 55 52.7
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 3.0e-06 56.2 70 51.4


User provided reference genes

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