Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 5.0e-221 770.8 381 100.0
SMO118G0478 Selaginella moellendorffii HOM05D012532 ORTHO05D376427 6.9e-29 132.5 85 80.0
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.3e-22 111.7 202 43.6
SMO147G0104 Selaginella moellendorffii HOM05D012532 ORTHO05D377185 1.8e-21 107.8 55 94.5
SMO147G0083 Selaginella moellendorffii HOM05D032379 ORTHO05D377691 7.4e-15 85.9 44 97.7
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 3.1e-13 80.5 138 38.4
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.5e-12 78.2 138 38.4
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 5.8e-12 76.3 138 37.7
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 5.8e-12 76.3 138 37.7
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.0e-11 75.5 139 38.1
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.3e-11 75.1 138 37.7
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.3e-11 75.1 138 37.7
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 1.3e-11 75.1 138 37.7
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.2e-11 74.3 138 37.0
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 2.2e-11 74.3 138 36.2
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 2.2e-11 74.3 137 40.9
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.9e-11 73.9 138 37.0
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 2.9e-11 73.9 138 37.7
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 3.8e-11 73.6 138 36.2
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 3.8e-11 73.6 138 37.0
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 6.5e-11 72.8 138 37.0
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 6.5e-11 72.8 138 37.7
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 6.5e-11 72.8 138 37.0
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 8.4e-11 72.4 138 36.2
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.4e-11 72.4 171 33.3
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 8.4e-11 72.4 138 36.2
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.1e-10 72.0 138 36.2
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.1e-10 72.0 138 36.2
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.1e-10 72.0 138 35.5
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.1e-10 72.0 202 31.2
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.4e-10 71.6 138 35.5
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.4e-10 71.6 138 35.5
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.4e-10 71.6 138 36.2
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.4e-10 71.6 138 35.5
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 1.9e-10 71.2 138 35.5
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 2.5e-10 70.9 139 36.0
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 2.5e-10 70.9 138 36.2
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 2.5e-10 70.9 138 36.2
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.5e-10 70.9 138 35.5
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 2.5e-10 70.9 138 35.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 2.5e-10 70.9 138 34.8
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 3.2e-10 70.5 138 34.8
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 3.2e-10 70.5 138 35.5
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 3.2e-10 70.5 138 35.5
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.2e-10 70.5 138 34.8
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.2e-10 70.5 138 34.8
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 3.2e-10 70.5 138 34.8
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 3.2e-10 70.5 138 35.5
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 4.2e-10 70.1 108 40.7
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 4.2e-10 70.1 138 34.8
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.2e-10 70.1 138 34.8
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 4.2e-10 70.1 138 36.2
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 5.5e-10 69.7 138 35.5
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 5.5e-10 69.7 138 35.5
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 5.5e-10 69.7 138 34.8
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 7.2e-10 69.3 138 34.1
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 9.3e-10 68.9 138 34.1
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.2e-09 68.6 138 33.3
SMO119G0017 Selaginella moellendorffii HOM05D012532 ORTHO05D374550 1.2e-09 68.6 95 42.1
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.2e-09 68.6 138 34.8
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.6e-09 68.2 136 33.8
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.6e-09 68.2 136 33.8
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.6e-09 68.2 138 33.3
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.6e-09 68.2 138 34.8
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 1.6e-09 68.2 138 35.5
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.6e-09 68.2 138 34.8
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.6e-09 68.2 138 34.1
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 2.1e-09 67.8 138 34.8
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.1e-09 67.8 138 34.1
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 2.1e-09 67.8 137 34.3
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 2.1e-09 67.8 138 32.6
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.1e-09 67.8 137 34.3
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 2.1e-09 67.8 138 32.6
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 2.1e-09 67.8 138 35.5
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.1e-09 67.8 138 34.8
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.7e-09 67.4 138 33.3
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 2.7e-09 67.4 138 32.6
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 4.6e-09 66.6 138 34.1
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.6e-09 66.6 137 34.3
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.6e-09 66.6 137 34.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 4.6e-09 66.6 137 34.3
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 4.6e-09 66.6 138 33.3
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 7.9e-09 65.9 138 32.6
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 7.9e-09 65.9 138 34.8
SMO118G0410 Selaginella moellendorffii HOM05D001269 ORTHO05D001083 1.0e-08 65.5 65 49.2
SMO222G0021 Selaginella moellendorffii HOM05D012532 ORTHO05D377418 1.0e-08 65.5 65 49.2
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.3e-08 65.1 138 32.6
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.3e-08 65.1 138 32.6
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.3e-08 65.1 138 33.3
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.8e-08 64.7 138 33.3
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 2.3e-08 64.3 138 32.6
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 2.3e-08 64.3 138 32.6
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.3e-08 64.3 138 33.3
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 2.3e-08 64.3 138 32.6
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.3e-08 64.3 138 32.6
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 3.0e-08 63.9 138 32.6
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 3.0e-08 63.9 138 32.6
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 3.0e-08 63.9 138 31.9
SMO163G0074 Selaginella moellendorffii HOM05D012532 ORTHO05D375152 3.9e-08 63.5 50 62.0
SMO119G0054 Selaginella moellendorffii HOM05D012532 ORTHO05D377455 5.1e-08 63.2 60 53.3
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 6.7e-08 62.8 137 32.1
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 8.7e-08 62.4 138 32.6
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 8.7e-08 62.4 138 32.6
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 8.7e-08 62.4 197 26.9
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.5e-07 61.6 138 32.6
SMO119G0148 Selaginella moellendorffii HOM05D012532 ORTHO05D376163 3.3e-07 60.5 62 53.2
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.3e-06 58.5 159 30.2
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 1.6e-06 58.2 84 39.3
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.6e-06 58.2 83 42.2
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.2e-06 57.8 84 39.3


User provided reference genes

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