Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO014G0005 Selaginella moellendorffii HOM05D000053 ORTHO05D011302 6.4e-172 607.8 439 100.0
SMO304G0119 Selaginella moellendorffii HOM05D000053 ORTHO05D011302 2.3e-89 333.6 411 77.4
SMO304G0092 Selaginella moellendorffii HOM05D000053 ORTHO05D011302 9.6e-75 285.0 330 67.0
SMO014G0034 Selaginella moellendorffii HOM05D000071 ORTHO05D000029 7.4e-27 125.9 362 32.6
SMO014G0017 Selaginella moellendorffii HOM05D000071 ORTHO05D000029 7.0e-17 92.8 110 51.8
SMO115G0225 Selaginella moellendorffii HOM05D000053 ORTHO05D011302 4.5e-16 90.1 332 45.8
SMO013G0021 Selaginella moellendorffii HOM05D021949 ORTHO05D000029 5.7e-11 73.2 83 51.8
Ah.12g057020 Amaranthus hybridus HOM05D000053 ORTHO05D000035 2.8e-10 70.9 193 31.1
Oeu038894.1 Olea europaea HOM05D000071 ORTHO05D000029 2.8e-10 70.9 184 31.5
Gorai.002G049400 Gossypium raimondii HOM05D000021 ORTHO05D000010 1.8e-09 68.2 194 29.4
Ah.12g057030 Amaranthus hybridus HOM05D000053 ORTHO05D000035 3.1e-09 67.4 175 32.6
Migut.G01136 Erythranthe guttata HOM05D000094 ORTHO05D002388 3.1e-09 67.4 182 29.1
Gohir.D01G039832 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.1e-09 67.4 194 29.4
Prupe.2G169200 Prunus persica HOM05D000071 ORTHO05D000029 4.1e-09 67.0 194 32.0
MD05G1095300 Malus domestica HOM05D000053 ORTHO05D000448 5.3e-09 66.6 223 30.5
Medtr7g009510 Medicago truncatula HOM05D000053 ORTHO05D000035 5.3e-09 66.6 212 30.7
SMO172G0007 Selaginella moellendorffii HOM05D000517 ORTHO05D003374 9.1e-09 65.9 196 32.1
Atru.chr11.784 Acer truncatum HOM05D000517 ORTHO05D000751 1.2e-08 65.5 224 26.8
MBI17_g35252_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 2.0e-08 64.7 178 33.1
RcHm_v2.0_Chr1g0355001 Rosa chinensis HOM05D000071 ORTHO05D000029 2.7e-08 64.3 193 30.1
Prupe.3G164300 Prunus persica HOM05D000517 ORTHO05D000751 3.5e-08 63.9 218 27.1
Eucgr.E00143 Eucalyptus grandis HOM05D000053 ORTHO05D000035 4.5e-08 63.5 199 29.1
TWI14G1242 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 4.5e-08 63.5 134 34.3
arahy.Tifrunner.gnm1.ann1.Q6J9W3 Arachis hypogaea HOM05D000071 ORTHO05D000029 5.9e-08 63.2 201 30.3
Gohir.A01G049266 Gossypium hirsutum HOM05D000021 ORTHO05D000010 5.9e-08 63.2 194 28.4
BcaNung05943 Brassica carinata HOM05D000053 ORTHO05D000035 7.7e-08 62.8 217 30.0
Medtr7g010730 Medicago truncatula HOM05D000053 ORTHO05D000035 7.7e-08 62.8 214 30.4
SEGI_06049 Sequoiadendron giganteum HOM05D000071 ORTHO05D000029 7.7e-08 62.8 190 28.9
SEGI_27904 Sequoiadendron giganteum HOM05D000071 ORTHO05D000029 7.7e-08 62.8 190 28.9
EL10Ac3g05932 Beta vulgaris HOM05D000071 ORTHO05D000029 1.0e-07 62.4 206 30.6
FAN02G3661 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.0e-07 62.4 186 32.8
Gohir.A01G054800 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.0e-07 62.4 206 33.0
Thecc.07G083100 Theobroma cacao HOM05D000071 ORTHO05D000029 1.0e-07 62.4 205 31.2
C08p34480 Brassica napus HOM05D000053 ORTHO05D000035 1.3e-07 62.0 218 29.8
Carub.0003s2531 Capsella rubella HOM05D000053 ORTHO05D000035 1.3e-07 62.0 187 32.6
CsaV3_6G006680 Cucumis sativus L. HOM05D000053 ORTHO05D000035 1.3e-07 62.0 180 27.8
Eucgr.C03758 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.3e-07 62.0 181 29.8
Phvul.008G095301 Phaseolus vulgaris HOM05D000053 ORTHO05D000448 1.3e-07 62.0 145 31.0
QL03p030974 Quercus lobata HOM05D000053 ORTHO05D000035 1.3e-07 62.0 201 28.9
RcHm_v2.0_Chr6g0275331 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-07 62.0 120 35.0
CSS0030461 Camellia sinensis var. sinensis HOM05D000517 ORTHO05D000751 1.7e-07 61.6 223 26.0
CSS0044189 Camellia sinensis var. sinensis HOM05D000517 ORTHO05D000751 1.7e-07 61.6 223 26.0
Gohir.A02G127800 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.7e-07 61.6 208 31.7
MBI17_g47919_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 1.7e-07 61.6 193 31.6
GSVIVG01020514001 Vitis vinifera HOM05D000029 ORTHO05D002162 1.7e-07 61.6 92 39.1
Ciclev10018220m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.2e-07 61.2 183 31.7
Potri.018G141000 Populus trichocarpa HOM05D000517 ORTHO05D000751 2.2e-07 61.2 188 29.8
Rhsim02G0089500 Rhododendron simsii HOM05D000054 ORTHO05D000171 2.2e-07 61.2 219 30.6
Thecc.05G218400 Theobroma cacao HOM05D000071 ORTHO05D000029 2.2e-07 61.2 183 31.1
Ciclev10027376m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.9e-07 60.8 191 30.4
SalBow1G6716 Salvia bowleyana HOM05D000021 ORTHO05D000010 2.9e-07 60.8 184 30.4
AUR62031446 Chenopodium quinoa HOM05D000071 ORTHO05D000029 3.8e-07 60.5 218 28.4
Cc04_g14480 Coffea canephora HOM05D041214 ORTHO05D025128 3.8e-07 60.5 126 35.7
ECA238G2556 Erigeron canadensis HOM05D000517 ORTHO05D003374 3.8e-07 60.5 139 31.7
ECA246G4511 Erigeron canadensis HOM05D000517 ORTHO05D000751 3.8e-07 60.5 132 34.8
MBI17_g21964_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 3.8e-07 60.5 178 32.0
MBI17_g33047_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 3.8e-07 60.5 178 32.0
MBI17_g33050_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 3.8e-07 60.5 211 29.4
RcHm_v2.0_Chr5g0069511 Rosa chinensis HOM05D000071 ORTHO05D000029 3.8e-07 60.5 201 27.9
AagrBONN_evm.TU.Sc2ySwM_117.2213 Anthoceros agrestis HOM05D013037 ORTHO05D017308 5.0e-07 60.1 166 32.5
CAN.G575.11 Capsicum annuum HOM05D001165 ORTHO05D001347 5.0e-07 60.1 184 30.4
Ciclev10017744m.g Citrus clementina HOM05D000071 ORTHO05D000029 5.0e-07 60.1 178 33.7
FAN11G3620 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.0e-07 60.1 180 30.6
MBI17_g34868_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 5.0e-07 60.1 178 32.0
Sed0007677 Sechium edule HOM05D000517 ORTHO05D000751 5.0e-07 60.1 212 28.8
DCAR_026814 Daucus carota HOM05D000517 ORTHO05D000751 6.5e-07 59.7 188 29.3
Mapoly0090s0078 Marchantia polymorpha HOM05D022608 ORTHO05D002217 8.5e-07 59.3 187 29.9
Medtr3g045020 Medicago truncatula HOM05D000053 ORTHO05D000035 8.5e-07 59.3 208 31.7
Potri.012G007901 Populus trichocarpa HOM05D000053 ORTHO05D000035 8.5e-07 59.3 187 24.1
PGR102G2300 Punica granatum HOM05D000071 ORTHO05D000029 8.5e-07 59.3 189 29.1
QL09p014118 Quercus lobata HOM05D000071 ORTHO05D000029 8.5e-07 59.3 183 29.0
SMO228G0161 Selaginella moellendorffii HOM05D000053 ORTHO05D000035 8.5e-07 59.3 142 34.5
SEGI_34273 Sequoiadendron giganteum HOM05D000071 ORTHO05D000029 8.5e-07 59.3 204 26.5
CDE04G2469 Ceratophyllum demersum HOM05D000029 ORTHO05D011302 1.1e-06 58.9 133 30.8
BcaB04g20959 Brassica carinata HOM05D000054 ORTHO05D000171 1.5e-06 58.5 189 25.9
C04p46990 Brassica napus HOM05D000053 ORTHO05D000035 1.5e-06 58.5 179 30.2
BolC4t26293H Brassica oleracea HOM05D000053 ORTHO05D000035 1.5e-06 58.5 179 30.2
Oeu056112.2 Olea europaea HOM05D000021 ORTHO05D000010 1.5e-06 58.5 188 27.1
PSO170G2088 Papaver somniferum HOM05D000054 ORTHO05D000171 1.5e-06 58.5 69 44.9
RcHm_v2.0_Chr7g0206621 Rosa chinensis HOM05D000071 ORTHO05D000029 1.5e-06 58.5 174 31.6
AT2G25440 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 1.9e-06 58.2 185 28.1
BolC8t51049H Brassica oleracea HOM05D000053 ORTHO05D000035 1.9e-06 58.2 221 29.4
CDE06G2315 Ceratophyllum demersum HOM05D000517 ORTHO05D000751 1.9e-06 58.2 211 28.9
Ciclev10027041m.g Citrus clementina HOM05D000053 ORTHO05D000448 1.9e-06 58.2 229 27.1
Gohir.D04G148300 Gossypium hirsutum HOM05D000311 ORTHO05D000183 1.9e-06 58.2 195 32.8
Gohir.D05G357356 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.9e-06 58.2 162 32.1
MBI18_g41184_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 1.9e-06 58.2 183 29.5
Nitab4.5_0004940g0020 Nicotiana tabacum HOM05D000053 ORTHO05D000448 1.9e-06 58.2 150 31.3
QL12p009182 Quercus lobata HOM05D000053 ORTHO05D000035 1.9e-06 58.2 113 38.1
RcHm_v2.0_Chr3g0477991 Rosa chinensis HOM05D000053 ORTHO05D000448 1.9e-06 58.2 157 32.5
Thecc.07G083300 Theobroma cacao HOM05D000071 ORTHO05D000029 1.9e-06 58.2 187 28.9
BraA05t20194Z Brassica rapa HOM05D000053 ORTHO05D000035 2.5e-06 57.8 191 28.8
CBR_g779 Chara braunii HOM05D001523 ORTHO05D006295 2.5e-06 57.8 168 31.0
Ciclev10017561m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.5e-06 57.8 184 31.5
Haze_14293 Corylus avellana HOM05D000517 ORTHO05D000751 2.5e-06 57.8 224 27.2
Gorai.003G055300 Gossypium raimondii HOM05D000071 ORTHO05D000029 2.5e-06 57.8 189 31.2
Lsat_1_v5_gn_8_13781 Lactuca sativa HOM05D000071 ORTHO05D000029 2.5e-06 57.8 182 30.8
MBI17_g22334_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 2.5e-06 57.8 180 31.1
VMungo0331G1986 Vigna mungo HOM05D000311 ORTHO05D000183 2.5e-06 57.8 220 25.5
Ah.12g057040 Amaranthus hybridus HOM05D000053 ORTHO05D000035 3.2e-06 57.4 197 29.9
arahy.Tifrunner.gnm1.ann1.93ITJJ Arachis hypogaea HOM05D000053 ORTHO05D000448 3.2e-06 57.4 139 31.7
CSS0022446 Camellia sinensis var. sinensis HOM05D002117 ORTHO05D002151 3.2e-06 57.4 125 38.4
CiPaw.04G193500 Carya illinoinensis HOM05D000053 ORTHO05D000035 3.2e-06 57.4 162 27.2
Duzib138G0060 Durio zibethinus HOM05D000053 ORTHO05D000035 3.2e-06 57.4 174 25.9
ECA238G0017 Erigeron canadensis HOM05D000071 ORTHO05D003088 3.2e-06 57.4 195 30.3
Nitab4.5_0001265g0100 Nicotiana tabacum HOM05D000021 ORTHO05D000010 3.2e-06 57.4 190 30.5
Potri.012G020895 Populus trichocarpa HOM05D000053 ORTHO05D000035 3.2e-06 57.4 167 28.1
QL03p025309 Quercus lobata HOM05D000053 ORTHO05D000035 3.2e-06 57.4 203 26.6
RcHm_v2.0_Chr1g0315321 Rosa chinensis HOM05D000071 ORTHO05D000029 3.2e-06 57.4 106 36.8
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 3.2e-06 57.4 138 29.7
AagrBONN_evm.TU.Sc2ySwM_368.1138 Anthoceros agrestis HOM05D000031 ORTHO05D001864 4.2e-06 57.0 212 28.8
CANSAT80G1027 Cannabis sativa HOM05D000071 ORTHO05D000029 4.2e-06 57.0 215 28.8
CAN.G538.6 Capsicum annuum HOM05D016353 ORTHO05D017748 4.2e-06 57.0 106 37.7
CAN.G575.9 Capsicum annuum HOM05D000053 ORTHO05D000035 4.2e-06 57.0 186 32.8
Ciclev10029913m.g Citrus clementina HOM05D000071 ORTHO05D000029 4.2e-06 57.0 184 31.0
Nn2g15246 Nelumbo nucifera HOM05D000071 ORTHO05D000029 4.2e-06 57.0 189 30.7
Solyc12g098570.2 Solanum lycopersicum HOM05D000517 ORTHO05D000751 4.2e-06 57.0 189 28.6
PGSC0003DMG400037662 Solanum tuberosum HOM05D000053 ORTHO05D000035 4.2e-06 57.0 202 29.7
TWI38G2367 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 4.2e-06 57.0 201 25.9
AL4G12910 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 5.5e-06 56.6 181 27.6
CANSAT54G0606 Cannabis sativa HOM05D000053 ORTHO05D000035 5.5e-06 56.6 219 28.8
CiPaw.04G193600 Carya illinoinensis HOM05D000053 ORTHO05D000035 5.5e-06 56.6 179 26.8
Cc01_g08290 Coffea canephora HOM05D000053 ORTHO05D000035 5.5e-06 56.6 202 30.2
MELO3C005452.2 Cucumis melo HOM05D000071 ORTHO05D000029 5.5e-06 56.6 142 28.9
Eucgr.G03159 Eucalyptus grandis HOM05D000071 ORTHO05D000029 5.5e-06 56.6 151 31.1
FvH4_6g21374 Fragaria vesca HOM05D000053 ORTHO05D000448 5.5e-06 56.6 132 33.3
Nitab4.5_0008015g0010 Nicotiana tabacum HOM05D000071 ORTHO05D000029 5.5e-06 56.6 196 30.1
Oeu026370.1 Olea europaea HOM05D000053 ORTHO05D000035 5.5e-06 56.6 199 26.1
Peaxi162Scf00299g00016 Petunia axillaris HOM05D000053 ORTHO05D000035 5.5e-06 56.6 190 30.0
Rhsim09G0087000 Rhododendron simsii HOM05D000517 ORTHO05D000751 5.5e-06 56.6 223 25.1
TPR.G32041 Trifolium pratense HOM05D000053 ORTHO05D000035 5.5e-06 56.6 207 30.9
Aa31sc72G20 Aethionema arabicum HOM05D000053 ORTHO05D000035 7.2e-06 56.2 197 32.0
arahy.Tifrunner.gnm1.ann1.978HCZ Arachis hypogaea HOM05D000311 ORTHO05D000183 7.2e-06 56.2 185 28.6
MELO3C005427.2 Cucumis melo HOM05D000071 ORTHO05D000029 7.2e-06 56.2 142 28.9
DCAR_001832 Daucus carota HOM05D000053 ORTHO05D000035 7.2e-06 56.2 215 27.4
Dinv22125 Davidia involucrata HOM05D003883 ORTHO05D004605 7.2e-06 56.2 192 29.7
Eucgr.C00564 Eucalyptus grandis HOM05D000029 ORTHO05D001072 7.2e-06 56.2 216 25.9
Mapoly0049s0132 Marchantia polymorpha HOM05D000094 ORTHO05D002388 7.2e-06 56.2 142 33.1
Medtr4g017730 Medicago truncatula HOM05D000053 ORTHO05D000448 7.2e-06 56.2 204 25.0
Prupe.4G232400 Prunus persica HOM05D000053 ORTHO05D000035 7.2e-06 56.2 128 31.2
QL09p011737 Quercus lobata HOM05D000071 ORTHO05D000029 7.2e-06 56.2 190 30.5
TPR.G8189 Trifolium pratense HOM05D000053 ORTHO05D000448 7.2e-06 56.2 142 28.9
GSVIVG01033116001 Vitis vinifera HOM05D000071 ORTHO05D000029 7.2e-06 56.2 166 30.1
Ah.08g218180 Amaranthus hybridus HOM05D000071 ORTHO05D000029 9.4e-06 55.8 181 30.9
CsaV3_1G010000 Cucumis sativus L. HOM05D000071 ORTHO05D000029 9.4e-06 55.8 185 30.3
Duzib151G0121 Durio zibethinus HOM05D000021 ORTHO05D000010 9.4e-06 55.8 197 26.9
Eucgr.E02541 Eucalyptus grandis HOM05D000053 ORTHO05D000035 9.4e-06 55.8 174 25.3
PSO528G0158 Papaver somniferum HOM05D000054 ORTHO05D000171 9.4e-06 55.8 75 38.7
Phvul.005G054300 Phaseolus vulgaris HOM05D000029 ORTHO05D002162 9.4e-06 55.8 140 30.7
Prupe.4G116900 Prunus persica HOM05D000071 ORTHO05D000029 9.4e-06 55.8 173 32.4
QL05p008200 Quercus lobata HOM05D000071 ORTHO05D000029 9.4e-06 55.8 222 29.3
QL05p024087 Quercus lobata HOM05D000071 ORTHO05D000029 9.4e-06 55.8 191 29.8
RcHm_v2.0_Chr1g0315391 Rosa chinensis HOM05D000071 ORTHO05D000029 9.4e-06 55.8 120 32.5
PGSC0003DMG400015351 Solanum tuberosum HOM05D000053 ORTHO05D000035 9.4e-06 55.8 204 28.9
Thecc.09G137900 Theobroma cacao HOM05D000311 ORTHO05D000183 9.4e-06 55.8 171 32.7


User provided reference genes

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