Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 5.9e-145 517.7 269 100.0
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 2.3e-56 223.4 365 40.8
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 3.7e-54 216.1 315 43.8
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 4.8e-54 215.7 292 45.5
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 2.4e-53 213.4 332 38.3
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 2.0e-52 210.3 345 37.7
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 1.7e-51 207.2 329 38.9
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 6.5e-51 205.3 368 37.0
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 3.2e-50 203.0 332 36.4
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 3.2e-50 203.0 361 35.5
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 9.4e-50 201.4 368 35.3
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 6.1e-49 198.7 368 34.5
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 1.0e-48 198.0 313 38.3
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 3.0e-48 196.4 380 34.5
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 6.7e-48 195.3 190 53.2
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 8.8e-48 194.9 355 36.3
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 8.8e-48 194.9 354 35.3
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 1.1e-47 194.5 372 35.2
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 1.5e-47 194.1 289 40.8
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 2.0e-47 193.7 369 33.9
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 2.0e-47 193.7 352 35.8
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 2.0e-47 193.7 368 35.3
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 2.6e-47 193.4 364 34.9
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 7.4e-47 191.8 361 34.9
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 9.7e-47 191.4 353 34.8
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 9.7e-47 191.4 332 36.7
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.3e-46 191.0 364 34.3
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 1.3e-46 191.0 383 33.2
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 1.7e-46 190.7 340 36.5
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.8e-46 189.9 366 34.2
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 4.8e-46 189.1 362 35.4
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 8.2e-46 188.3 360 35.0
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 8.2e-46 188.3 182 51.6
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 8.2e-46 188.3 376 33.8
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.1e-45 188.0 357 35.3
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 1.1e-45 188.0 381 33.1
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 1.1e-45 188.0 347 35.4
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 1.4e-45 187.6 372 34.1
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 2.4e-45 186.8 377 33.2
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 3.1e-45 186.4 369 33.6
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 4.1e-45 186.0 187 52.9
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 4.1e-45 186.0 373 33.0
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 5.3e-45 185.7 364 34.3
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 5.3e-45 185.7 364 33.8
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 7.0e-45 185.3 358 34.6
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 7.0e-45 185.3 384 34.1
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 1.6e-44 184.1 192 51.6
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.6e-44 183.3 381 31.8
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 3.5e-44 183.0 364 33.5
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 3.5e-44 183.0 367 34.6
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 3.5e-44 183.0 369 34.1
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 3.5e-44 183.0 232 44.8
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 3.5e-44 183.0 379 32.2
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 4.5e-44 182.6 279 41.2
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 5.9e-44 182.2 361 33.0
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 5.9e-44 182.2 381 31.5
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 7.7e-44 181.8 188 48.9
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 7.7e-44 181.8 355 34.6
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.0e-43 181.4 187 50.3
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 1.0e-43 181.4 360 33.6
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 1.7e-43 180.6 376 33.8
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 2.2e-43 180.3 362 33.4
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 2.9e-43 179.9 360 33.6
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 2.9e-43 179.9 360 33.6
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 2.9e-43 179.9 369 33.1
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 3.8e-43 179.5 366 33.9
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 3.8e-43 179.5 363 33.3
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 3.8e-43 179.5 360 33.6
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 3.8e-43 179.5 182 51.1
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 5.0e-43 179.1 354 33.9
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 5.0e-43 179.1 182 51.1
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 6.5e-43 178.7 379 32.5
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 1.1e-42 177.9 373 33.0
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 1.1e-42 177.9 361 34.1
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.5e-42 177.6 363 33.1
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.5e-42 177.6 364 32.4
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.9e-42 177.2 208 47.1
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 2.5e-42 176.8 370 33.2
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 3.2e-42 176.4 358 33.5
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 3.2e-42 176.4 196 48.0
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 4.2e-42 176.0 365 32.6
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 5.5e-42 175.6 369 32.8
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 5.5e-42 175.6 373 30.8
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 5.5e-42 175.6 356 34.0
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 7.2e-42 175.3 373 32.4
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 7.2e-42 175.3 391 31.2
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 7.2e-42 175.3 388 30.4
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 7.2e-42 175.3 357 33.6
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 7.2e-42 175.3 358 33.5
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.6e-41 174.1 369 31.7
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 1.6e-41 174.1 345 33.0
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.7e-41 173.3 374 31.8
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 3.6e-41 172.9 176 51.1
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 4.7e-41 172.6 338 33.4
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 1.0e-40 171.4 342 33.0
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 1.4e-40 171.0 390 31.0
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 5.2e-40 169.1 361 31.9
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 6.8e-40 168.7 157 52.9
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 4.4e-39 166.0 195 45.1
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 4.4e-39 166.0 384 30.5
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 1.3e-38 164.5 344 32.8
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 1.7e-38 164.1 208 44.2
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 1.4e-37 161.0 419 30.1
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 1.6e-36 157.5 134 57.5
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 4.5e-36 156.0 429 28.4
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 1.3e-35 154.5 432 28.7
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 3.8e-35 152.9 336 32.1
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 6.1e-33 145.6 183 43.2
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 3.4e-31 139.8 413 27.4
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 5.7e-31 139.0 241 35.7
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 4.1e-29 132.9 135 50.4
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 2.9e-27 126.7 107 57.0
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 1.5e-26 124.4 271 32.5
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 2.8e-25 120.2 325 30.2
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 1.1e-21 108.2 232 30.6
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.4e-21 107.8 266 30.8
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 7.8e-20 102.1 312 27.2
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 2.3e-16 90.5 72 58.3
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 6.8e-16 89.0 232 27.2
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 6.0e-12 75.9 57 64.9
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 5.6e-10 69.3 59 55.9
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 1.3e-06 58.2 276 24.3
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 2.2e-06 57.4 234 24.4
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 6.4e-06 55.8 58 43.1


User provided reference genes

Program Settings