Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO012G0036 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 4.8e-45 184.1 91 100.0
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 5.8e-43 177.2 91 97.8
AagrBONN_evm.TU.Sc2ySwM_344.2496 Anthoceros agrestis HOM05D003510 ORTHO05D004144 3.9e-23 111.3 91 58.2
SMO119G0319 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 3.9e-23 111.3 89 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2495 Anthoceros agrestis HOM05D003510 ORTHO05D004144 4.8e-21 104.4 89 56.2
arahy.Tifrunner.gnm1.ann1.LKJ3D4 Arachis hypogaea HOM05D003510 ORTHO05D004144 1.8e-20 102.4 89 56.2
arahy.Tifrunner.gnm1.ann1.VLLQ8N Arachis hypogaea HOM05D003510 ORTHO05D004144 1.8e-20 102.4 89 56.2
TAR371G0378 Trochodendron aralioides HOM05D003510 ORTHO05D004144 1.8e-20 102.4 89 53.9
Aqoxy3G03956 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 2.4e-20 102.1 89 49.4
Glyma.01G080400 Glycine max HOM05D003510 ORTHO05D004144 2.4e-20 102.1 87 56.3
Manes.14G104000 Manihot esculenta HOM05D003510 ORTHO05D004144 2.4e-20 102.1 89 53.9
Phvul.003G030100 Phaseolus vulgaris HOM05D003510 ORTHO05D004144 3.1e-20 101.7 87 56.3
Ciclev10016740m.g Citrus clementina HOM05D003510 ORTHO05D004144 4.1e-20 101.3 89 53.9
Migut.E00355 Erythranthe guttata HOM05D003510 ORTHO05D004144 5.3e-20 100.9 89 52.8
VMungo1215G1668 Vigna mungo HOM05D003510 ORTHO05D004144 5.3e-20 100.9 87 55.2
Nn4g23884 Nelumbo nucifera HOM05D003510 ORTHO05D004144 6.9e-20 100.5 89 52.8
Solyc04g007260.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 6.9e-20 100.5 89 53.9
Sopen04g002320 Solanum pennellii HOM05D003510 ORTHO05D004144 6.9e-20 100.5 89 53.9
Ah.02g127620 Amaranthus hybridus HOM05D003510 ORTHO05D004144 9.0e-20 100.1 89 55.1
EL10Ac6g14376 Beta vulgaris HOM05D003510 ORTHO05D004144 9.0e-20 100.1 89 52.8
CiPaw.05G239200 Carya illinoinensis HOM05D003510 ORTHO05D004144 9.0e-20 100.1 89 52.8
MD16G1041000 Malus domestica HOM05D003510 ORTHO05D004144 9.0e-20 100.1 89 50.6
GSVIVG01011878001 Vitis vinifera HOM05D003510 ORTHO05D004144 9.0e-20 100.1 89 50.6
QL01p040948 Quercus lobata HOM05D003510 ORTHO05D004144 1.2e-19 99.8 89 52.8
TWI75G1742 Tripterygium wilfordii HOM05D003510 ORTHO05D004144 1.2e-19 99.8 89 52.8
HPP92_015110 Vanilla planifolia HOM05D003510 ORTHO05D004144 1.2e-19 99.8 85 54.1
HPP92_015116 Vanilla planifolia HOM05D003510 ORTHO05D004144 1.2e-19 99.8 85 54.1
Cc11_g09950 Coffea canephora HOM05D003510 ORTHO05D004144 1.5e-19 99.4 88 53.4
Medtr5g056390 Medicago truncatula HOM05D003510 ORTHO05D004144 1.5e-19 99.4 89 52.8
Lalb_Chr04g0254661 Lupinus albus HOM05D003510 ORTHO05D004144 2.6e-19 98.6 86 52.3
PSO063G2460 Papaver somniferum HOM05D003510 ORTHO05D004144 2.6e-19 98.6 89 53.9
PGSC0003DMG400005981 Solanum tuberosum HOM05D003510 ORTHO05D004144 3.4e-19 98.2 89 52.8
Atru.chr11.132 Acer truncatum HOM05D003510 ORTHO05D004144 4.5e-19 97.8 89 51.7
CAN.G1052.1 Capsicum annuum HOM05D003510 ORTHO05D004144 4.5e-19 97.8 87 52.9
AT1G68260 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 5.9e-19 97.4 87 51.7
Carub.0002s1476 Capsella rubella HOM05D003510 ORTHO05D004144 7.6e-19 97.1 87 51.7
COL.COLO4_04883 Corchorus olitorius HOM05D003510 ORTHO05D004144 7.6e-19 97.1 89 51.7
Lj2g0023320 Lotus japonicus HOM05D003510 ORTHO05D004144 7.6e-19 97.1 90 53.3
Nitab4.5_0007398g0020 Nicotiana tabacum HOM05D003510 ORTHO05D004144 7.6e-19 97.1 89 51.7
Cpa.g.sc65.43 Carica papaya HOM05D003510 ORTHO05D004144 1.0e-18 96.7 89 50.6
SEGI_33057 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 1.0e-18 96.7 67 64.2
GSVIVG01011876001 Vitis vinifera HOM05D003510 ORTHO05D004144 1.0e-18 96.7 86 48.8
CARHR060960 Cardamine hirsuta HOM05D003510 ORTHO05D004144 1.3e-18 96.3 87 50.6
Potri.010G123102 Populus trichocarpa HOM05D003510 ORTHO05D004144 1.3e-18 96.3 89 50.6
RcHm_v2.0_Chr4g0434941 Rosa chinensis HOM05D003510 ORTHO05D004144 1.3e-18 96.3 89 50.6
Peaxi162Scf00564g00029 Petunia axillaris HOM05D003510 ORTHO05D004144 1.7e-18 95.9 91 49.5
Prupe.1G313100 Prunus persica HOM05D003510 ORTHO05D004144 1.7e-18 95.9 89 48.3
Rhsim09G0106600 Rhododendron simsii HOM05D003510 ORTHO05D004144 1.7e-18 95.9 89 50.6
BraA07t31088Z Brassica rapa HOM05D003510 ORTHO05D004144 2.2e-18 95.5 89 50.6
THA.LOC104808154 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 2.9e-18 95.1 89 49.4
Sc11g0003500 Simmondsia chinensis HOM05D003510 ORTHO05D004144 3.8e-18 94.7 88 53.4
TPR.G27953 Trifolium pratense HOM05D003510 ORTHO05D004144 3.8e-18 94.7 89 51.7
Hma1.2p1_0061F.1_g033710 Hydrangea macrophylla HOM05D003510 ORTHO05D004144 5.0e-18 94.4 89 48.3
Nitab4.5_0000057g0210 Nicotiana tabacum HOM05D003510 ORTHO05D004144 5.0e-18 94.4 89 50.6
PGR102G3338 Punica granatum HOM05D003510 ORTHO05D004144 5.0e-18 94.4 89 50.6
Eucgr.B03007 Eucalyptus grandis HOM05D003510 ORTHO05D004144 6.5e-18 94.0 89 50.6
Solyc04g007200.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 6.5e-18 94.0 87 47.1
Sopen04g002260 Solanum pennellii HOM05D003510 ORTHO05D004144 6.5e-18 94.0 87 47.1
AL2G27110 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 8.5e-18 93.6 87 49.4
Thecc.02G226300 Theobroma cacao HOM05D003510 ORTHO05D004144 8.5e-18 93.6 88 52.3
Cpa.g.sc65.42 Carica papaya HOM05D003510 ORTHO05D004144 1.1e-17 93.2 89 51.7
FAN12G0948 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.1e-17 93.2 89 49.4
Hund25056 Selenicereus undatus HOM05D003510 ORTHO05D004144 1.1e-17 93.2 90 50.0
ATR1125G078 Amborella trichopoda HOM05D003510 ORTHO05D004144 1.4e-17 92.8 80 53.8
Haze_00607 Corylus avellana HOM05D003510 ORTHO05D004144 1.4e-17 92.8 73 60.3
Duzib248G1132 Durio zibethinus HOM05D003510 ORTHO05D004144 1.4e-17 92.8 89 49.4
Thhalv10019154m.g Eutrema salsugineum HOM05D003510 ORTHO05D004144 2.5e-17 92.0 88 51.1
FAN22G0292 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.5e-17 92.0 78 51.3
Sp5g23330 Schrenkiella parvula HOM05D003510 ORTHO05D004144 2.5e-17 92.0 80 50.0
Aa31sc376G40 Aethionema arabicum HOM05D003510 ORTHO05D004144 3.2e-17 91.7 91 48.4
Psat2g082000 Pisum sativum HOM05D003510 ORTHO05D004144 3.2e-17 91.7 77 54.5
PGSC0003DMG400007750 Solanum tuberosum HOM05D003510 ORTHO05D004144 4.2e-17 91.3 90 45.6
BcaB03g15105 Brassica carinata HOM05D003510 ORTHO05D004144 5.5e-17 90.9 89 48.3
Lsat_1_v5_gn_4_15820 Lactuca sativa HOM05D003510 ORTHO05D004144 5.5e-17 90.9 88 46.6
FAN12G1645 Fragaria x ananassa HOM05D003510 ORTHO05D004144 7.2e-17 90.5 76 53.9
CSS0018626 Camellia sinensis var. sinensis HOM05D003510 ORTHO05D004144 9.3e-17 90.1 89 47.2
Lalb_Chr04g0254671 Lupinus albus HOM05D003510 ORTHO05D004144 9.3e-17 90.1 72 55.6
DCAR_023651 Daucus carota HOM05D003510 ORTHO05D004144 1.2e-16 89.7 88 48.9
FAN12G2466 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.2e-16 89.7 89 46.1
Lj3A1013T42 Lonicera japonica HOM05D003510 ORTHO05D004144 1.2e-16 89.7 87 49.4
Gohir.D04G137800 Gossypium hirsutum HOM05D003510 ORTHO05D004144 1.6e-16 89.4 87 48.3
Gorai.012G122200 Gossypium raimondii HOM05D003510 ORTHO05D004144 1.6e-16 89.4 87 48.3
vmacro10568 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 1.6e-16 89.4 87 49.4
FvH4_4g27130 Fragaria vesca HOM05D003510 ORTHO05D004144 2.1e-16 89.0 73 56.2
SGA_v2.0_scaffold14G06881 Striga asiatica HOM05D003510 ORTHO05D004144 2.1e-16 89.0 88 47.7
AUR62034133 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.7e-16 88.6 86 46.5
AUR62034134 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.7e-16 88.6 86 46.5
AUR62037321 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.7e-16 88.6 88 50.0
AUR62044553 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.7e-16 88.6 86 46.5
AUR62044554 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.7e-16 88.6 86 46.5
BcaC08g46259 Brassica carinata HOM05D003510 ORTHO05D004144 3.6e-16 88.2 89 46.1
C06p41720 Brassica napus HOM05D003510 ORTHO05D004144 3.6e-16 88.2 89 46.1
MELO3C012260.2 Cucumis melo HOM05D003510 ORTHO05D004144 4.6e-16 87.8 88 46.6
ECA234G2589 Erigeron canadensis HOM05D003510 ORTHO05D004144 4.6e-16 87.8 89 46.1
HanXRQChr16g0529461 Helianthus annuus HOM05D003510 ORTHO05D004144 4.6e-16 87.8 88 45.5
Ca_10364_v3 Cicer arietinum L. HOM05D003510 ORTHO05D004144 7.9e-16 87.0 89 47.2
CsaV3_5G034440 Cucumis sativus L. HOM05D003510 ORTHO05D004144 7.9e-16 87.0 94 45.7
FAN17G2584 Fragaria x ananassa HOM05D003510 ORTHO05D004144 7.9e-16 87.0 89 44.9
CANSAT01G1441 Cannabis sativa HOM05D003510 ORTHO05D004144 1.0e-15 86.7 89 46.1
vmacro10567 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 1.4e-15 86.3 95 45.3
Ah.01g017060 Amaranthus hybridus HOM05D003510 ORTHO05D004144 1.8e-15 85.9 83 47.0
Lsat_1_v5_gn_5_163161 Lactuca sativa HOM05D003510 ORTHO05D004144 1.8e-15 85.9 90 43.3
Solyc04g007190.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 1.8e-15 85.9 86 45.3
PGSC0003DMG402015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.8e-15 85.9 89 43.8
Gorai.012G122300 Gossypium raimondii HOM05D003510 ORTHO05D004144 3.0e-15 85.1 87 48.3
THA.LOC104815461 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 6.7e-15 84.0 76 51.3
AT1G35290 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 8.8e-15 83.6 85 45.9
Migut.H02048 Erythranthe guttata HOM05D003510 ORTHO05D004144 8.8e-15 83.6 87 47.1
unitig_27.g25253 Utricularia gibba HOM05D003510 ORTHO05D004144 8.8e-15 83.6 89 44.9
Gohir.A04G098050 Gossypium hirsutum HOM05D003510 ORTHO05D004144 1.1e-14 83.2 87 47.1
PGSC0003DMG401015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.1e-14 83.2 86 45.3
Zm00001eb074540 Zea mays HOM05D003510 ORTHO05D004144 1.5e-14 82.8 86 46.5
AT1G68280 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.9e-14 82.4 87 43.7
AL1G49960 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 2.5e-14 82.0 85 44.7
Lj7P525T18 Lonicera japonica HOM05D003510 ORTHO05D004144 2.5e-14 82.0 75 50.7
Sed0022764 Sechium edule HOM05D003510 ORTHO05D004144 3.3e-14 81.6 72 54.2
Carub.0001s3288 Capsella rubella HOM05D003510 ORTHO05D004144 4.3e-14 81.3 89 44.9
Carub.0001s3293 Capsella rubella HOM05D003510 ORTHO05D004144 4.3e-14 81.3 78 46.2
RcHm_v2.0_Chr4g0434951 Rosa chinensis HOM05D003510 ORTHO05D004144 5.7e-14 80.9 89 42.7
Ah.01g005250 Amaranthus hybridus HOM05D000873 ORTHO05D001654 7.4e-14 80.5 83 43.4
CANSAT35G1684 Cannabis sativa HOM05D003510 ORTHO05D004144 7.4e-14 80.5 81 46.9
CANSAT35G1707 Cannabis sativa HOM05D003510 ORTHO05D004144 7.4e-14 80.5 80 45.0
RcHm_v2.0_Chr6g0286301 Rosa chinensis HOM05D003510 ORTHO05D004144 9.7e-14 80.1 76 47.4
CARHR220110 Cardamine hirsuta HOM05D003510 ORTHO05D004144 1.3e-13 79.7 78 43.6
FvH4_4g27160 Fragaria vesca HOM05D003510 ORTHO05D004144 1.3e-13 79.7 115 37.4
SGA_v2.0_scaffold73G24371 Striga asiatica HOM05D003510 ORTHO05D004144 1.7e-13 79.3 77 48.1
ClCG05G022600 Citrullus lanatus HOM05D003510 ORTHO05D004144 2.2e-13 79.0 71 52.1
Medtr5g056230 Medicago truncatula HOM05D003510 ORTHO05D004144 2.2e-13 79.0 71 53.5
RcHm_v2.0_Chr6g0286321 Rosa chinensis HOM05D003510 ORTHO05D004144 2.2e-13 79.0 76 47.4
AUR62044675 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.8e-13 78.6 70 47.1
CARHR286260 Cardamine hirsuta HOM05D003510 ORTHO05D004144 3.7e-13 78.2 87 42.5
HanXRQChr10g0288901 Helianthus annuus HOM05D003510 ORTHO05D004144 3.7e-13 78.2 88 43.2
HanXRQChr03g0078631 Helianthus annuus HOM05D003510 ORTHO05D004144 4.8e-13 77.8 88 43.2
Aqoxy1G03141 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 6.3e-13 77.4 89 42.7
Gohir.A04G098100 Gossypium hirsutum HOM05D003510 ORTHO05D004144 6.3e-13 77.4 84 47.6
Sp1g30110 Schrenkiella parvula HOM05D003510 ORTHO05D004144 6.3e-13 77.4 77 46.8
CANSAT35G0765 Cannabis sativa HOM05D003510 ORTHO05D004144 8.2e-13 77.0 83 44.6
FAN12G3824 Fragaria x ananassa HOM05D003510 ORTHO05D004144 8.2e-13 77.0 115 35.7
HanXRQChr10g0296841 Helianthus annuus HOM05D003510 ORTHO05D004144 1.1e-12 76.6 88 43.2
BcaB02g07984 Brassica carinata HOM05D003510 ORTHO05D004144 1.8e-12 75.9 65 53.8
AUR62022280 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.8e-12 75.9 68 47.1
Sabra10G0093200 Salix brachista HOM05D003510 ORTHO05D004144 3.1e-12 75.1 75 45.3
HanXRQChr10g0300041 Helianthus annuus HOM05D003510 ORTHO05D004144 4.1e-12 74.7 82 42.7
RcHm_v2.0_Chr6g0286191 Rosa chinensis HOM05D003510 ORTHO05D004144 4.1e-12 74.7 87 39.1
RcHm_v2.0_Chr6g0286261 Rosa chinensis HOM05D003510 ORTHO05D004144 4.1e-12 74.7 87 39.1
RcHm_v2.0_Chr6g0286141 Rosa chinensis HOM05D003510 ORTHO05D004144 5.3e-12 74.3 76 44.7
A09p18480 Brassica napus HOM05D003510 ORTHO05D004144 2.6e-11 72.0 85 42.4
Carub.0001s3294 Capsella rubella HOM05D003510 ORTHO05D004144 2.6e-11 72.0 87 40.2
MELO3C012259.2 Cucumis melo HOM05D003510 ORTHO05D004144 3.4e-11 71.6 72 43.1
RcHm_v2.0_Chr6g0286291 Rosa chinensis HOM05D003510 ORTHO05D004144 5.9e-11 70.9 76 43.4
Gohir.D04G137850 Gossypium hirsutum HOM05D003510 ORTHO05D004144 1.3e-10 69.7 87 42.5
Migut.M00675 Erythranthe guttata HOM05D003510 ORTHO05D004144 1.7e-10 69.3 85 38.8
THA.LOC104821911 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 2.2e-10 68.9 84 46.4
AL1G49980 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 2.9e-10 68.6 63 50.8
DCAR_026739 Daucus carota HOM05D003510 ORTHO05D004144 2.9e-10 68.6 72 45.8
Oeu059502.1 Olea europaea HOM05D003510 ORTHO05D004144 9.4e-09 63.5 53 58.5
Zm00001eb074550 Zea mays HOM05D003510 ORTHO05D004144 1.6e-08 62.8 74 41.9
Actinidia16662 Actinidia chinensis HOM05D003510 ORTHO05D004144 7.9e-08 60.5 53 52.8
DCAR_007249 Daucus carota HOM05D003510 ORTHO05D004144 1.4e-07 59.7 75 36.0
Os02g0660800 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 1.1e-06 56.6 86 32.6
AUR62023875 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.6e-06 55.5 50 48.0


User provided reference genes

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