Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO011G0029 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 1.1e-81 306.6 158 100.0
SMO053G0013 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 4.5e-35 151.8 194 52.6
FAN14G0206 Fragaria x ananassa HOM05D001750 ORTHO05D001825 1.2e-24 117.1 169 45.6
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 4.7e-24 115.2 169 45.0
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 6.2e-24 114.8 169 46.2
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 8.0e-24 114.4 180 45.0
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 8.0e-24 114.4 180 45.0
BolSC28t60406H Brassica oleracea HOM05D001750 ORTHO05D001825 1.0e-23 114.0 169 46.2
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 1.0e-23 114.0 169 46.2
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 1.0e-23 114.0 169 46.2
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 1.0e-23 114.0 169 46.2
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 1.4e-23 113.6 180 43.3
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 1.4e-23 113.6 180 43.3
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 1.4e-23 113.6 180 43.3
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 1.4e-23 113.6 180 43.3
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 1.4e-23 113.6 180 43.3
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 1.4e-23 113.6 180 43.3
CAN.G134.25 Capsicum annuum HOM05D001750 ORTHO05D001825 2.3e-23 112.8 180 45.0
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 2.3e-23 112.8 180 43.9
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 3.1e-23 112.5 169 45.6
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 3.1e-23 112.5 181 43.1
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 4.0e-23 112.1 169 46.2
Cfa005537 Carpinus fangiana HOM05D001750 ORTHO05D001825 4.0e-23 112.1 169 45.6
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 4.0e-23 112.1 169 45.6
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 4.0e-23 112.1 169 43.8
LjContig00315g0010666 Lotus japonicus HOM05D001750 ORTHO05D001825 4.0e-23 112.1 169 45.6
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 4.0e-23 112.1 169 45.6
SHI35585 Sapria himalayana HOM05D001750 ORTHO05D001825 4.0e-23 112.1 181 42.5
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 4.0e-23 112.1 169 45.6
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 4.0e-23 112.1 169 45.6
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 4.0e-23 112.1 180 42.8
Ah.10g027940 Amaranthus hybridus HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 42.8
Ah.10g028650 Amaranthus hybridus HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 42.8
AUR62042331 Chenopodium quinoa HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 42.8
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 44.4
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 44.4
SalBow1G5977 Salvia bowleyana HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 44.4
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 44.4
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 44.4
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 44.4
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 44.4
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 5.2e-23 111.7 180 44.4
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 6.8e-23 111.3 169 43.8
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 6.8e-23 111.3 169 43.8
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 6.8e-23 111.3 180 44.4
RcHm_v2.0_MTg0498221 Rosa chinensis HOM05D001750 ORTHO05D001825 6.8e-23 111.3 169 43.8
Sed0023702 Sechium edule HOM05D001750 ORTHO05D001825 6.8e-23 111.3 169 45.6
Hund27692 Selenicereus undatus HOM05D001750 ORTHO05D001825 8.9e-23 110.9 181 42.5
Hund29041 Selenicereus undatus HOM05D001750 ORTHO05D001825 8.9e-23 110.9 181 42.5
Hund31001 Selenicereus undatus HOM05D001750 ORTHO05D001825 8.9e-23 110.9 181 42.5
Lj2C1233T24 Lonicera japonica HOM05D001750 ORTHO05D001825 1.2e-22 110.5 180 44.4
RhsimMtG0004100 Rhododendron simsii HOM05D001750 ORTHO05D001825 1.5e-22 110.2 135 49.6
Atru.chr9.151 Acer truncatum HOM05D001750 ORTHO05D001825 5.8e-22 108.2 169 44.4
Glyma.15G187600 Glycine max HOM05D001750 ORTHO05D001825 9.8e-22 107.5 110 55.5
Glyma.15G187800 Glycine max HOM05D001750 ORTHO05D001825 9.8e-22 107.5 110 55.5
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.8e-22 107.5 169 45.0
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.8e-22 107.5 169 45.0
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.8e-22 107.5 169 45.0
arahy.Tifrunner.gnm1.ann1.BE3YYP Arachis hypogaea HOM05D001750 ORTHO05D001825 1.3e-21 107.1 110 54.5
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 1.3e-21 107.1 110 54.5
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 1.3e-21 107.1 110 54.5
Hma1.2p1_0034F.1_g021420 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.2e-21 106.3 121 52.1
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.2e-21 106.3 148 44.6
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 2.2e-21 106.3 168 42.9
Hund29121 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.2e-21 106.3 121 52.1
Actinidia34923 Actinidia chinensis HOM05D001750 ORTHO05D001825 3.7e-21 105.5 144 45.8
CAN.G1159.8 Capsicum annuum HOM05D001750 ORTHO05D001825 8.3e-21 104.4 110 53.6
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.9e-20 103.2 110 53.6
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.9e-20 103.2 110 53.6
CDE02G3422 Ceratophyllum demersum HOM05D001750 ORTHO05D001825 2.4e-20 102.8 169 44.4
Nitab4.5_0000593g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.2e-20 102.4 181 40.9
ECA234G2654 Erigeron canadensis HOM05D001750 ORTHO05D001825 7.0e-20 101.3 121 50.4
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 7.0e-20 101.3 169 43.8
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 7.0e-20 101.3 169 43.8
TAR022G0005 Trochodendron aralioides HOM05D001750 ORTHO05D001825 2.5e-17 92.8 180 34.4
Haze_27121 Corylus avellana HOM05D001750 ORTHO05D001825 3.6e-16 89.0 121 43.0
PGSC0003DMG400000928 Solanum tuberosum HOM05D001750 ORTHO05D001825 5.2e-15 85.1 99 49.5
Nitab4.5_0000172g0100 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.4e-12 77.0 91 47.3
PGSC0003DMG400029023 Solanum tuberosum HOM05D001750 ORTHO05D001825 6.0e-11 71.6 62 62.9
Nitab4.5_0001152g0320 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.0e-10 69.3 78 50.0
QL06p024879 Quercus lobata HOM05D001750 ORTHO05D001825 3.9e-10 68.9 60 65.0
MD13G1126900 Malus domestica HOM05D001750 ORTHO05D001825 6.6e-10 68.2 48 72.9
arahy.Tifrunner.gnm1.ann1.KHE2M7 Arachis hypogaea HOM05D001750 ORTHO05D001825 8.6e-10 67.8 49 69.4
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.5e-09 67.0 60 61.7
Peaxi162Scf00451g00046 Petunia axillaris HOM05D001750 ORTHO05D001825 1.5e-09 67.0 60 61.7
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 1.5e-09 67.0 60 61.7
Nitab4.5_0001360g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.3e-09 65.9 60 61.7
Oeu016296.1 Olea europaea HOM05D001750 ORTHO05D001825 3.3e-09 65.9 100 41.0
Ca_15051_v3 Cicer arietinum L. HOM05D001750 ORTHO05D010080 4.3e-09 65.5 49 67.3
Solyc03g061580.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.3e-09 65.5 67 56.7
Psat7g150640 Pisum sativum HOM05D001750 ORTHO05D001825 7.3e-09 64.7 59 61.0
SEGI_32159 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.2e-08 63.9 125 36.8
SEGI_35420 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.2e-08 63.9 125 36.8
Lalb_Chr02g0153721 Lupinus albus HOM05D001750 ORTHO05D001825 1.6e-08 63.5 133 37.6
Nitab4.5_0000085g0160 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.1e-08 63.2 60 58.3
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 6.2e-08 61.6 122 36.1
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 6.2e-08 61.6 122 36.1
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 6.2e-08 61.6 122 36.1
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 6.2e-08 61.6 122 36.1
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 8.1e-08 61.2 116 34.5
CSS0000875 Camellia sinensis var. sinensis HOM05D001750 ORTHO05D001825 1.1e-07 60.8 49 65.3
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 1.1e-07 60.8 122 35.2
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.1e-07 60.8 110 37.3
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.1e-07 60.8 110 37.3
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.1e-07 60.8 110 36.4
Nn212s45208 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.1e-07 60.8 110 36.4
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 1.1e-07 60.8 116 34.5
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 1.1e-07 60.8 110 36.4
Nitab4.5_0001788g0240 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.4e-07 60.5 72 45.8
AL7G50360 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 1.8e-07 60.1 132 35.6
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 1.8e-07 60.1 110 36.4
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 1.8e-07 60.1 110 36.4
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 1.8e-07 60.1 110 36.4
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 1.8e-07 60.1 110 36.4
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 1.8e-07 60.1 110 37.3
SEGI_32489 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.8e-07 60.1 110 38.2
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.8e-07 60.1 110 36.4
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 1.8e-07 60.1 110 36.4
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 2.3e-07 59.7 128 33.6
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 2.3e-07 59.7 110 36.4
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 3.1e-07 59.3 132 34.8
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 3.1e-07 59.3 122 34.4
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.1e-07 59.3 110 36.4
unitig_736.g22737 Utricularia gibba HOM05D001750 ORTHO05D001825 3.1e-07 59.3 128 33.6
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 4.0e-07 58.9 132 34.1
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 4.0e-07 58.9 132 34.1
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 4.0e-07 58.9 132 34.1
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 4.0e-07 58.9 132 34.1
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 4.0e-07 58.9 132 34.1
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 4.0e-07 58.9 132 34.1
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 4.0e-07 58.9 132 34.1
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 4.0e-07 58.9 110 35.5
arahy.Tifrunner.gnm1.ann1.B33B9N Arachis hypogaea HOM05D001750 ORTHO05D001825 5.2e-07 58.5 104 41.3
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 5.2e-07 58.5 122 34.4
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.2e-07 58.5 110 35.5
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 5.2e-07 58.5 122 35.2
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 5.2e-07 58.5 110 36.4
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 5.2e-07 58.5 110 36.4
Psat0ss8367g0120 Pisum sativum HOM05D001750 ORTHO05D001825 5.2e-07 58.5 110 36.4
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 5.2e-07 58.5 116 33.6
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.8e-07 58.2 110 35.5
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.8e-07 58.2 110 35.5
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 8.9e-07 57.8 122 35.2
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 8.9e-07 57.8 122 35.2
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.9e-07 57.8 110 35.5
Nn031s41610 Nelumbo nucifera HOM05D001750 ORTHO05D001825 8.9e-07 57.8 110 35.5
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 1.2e-06 57.4 108 38.9
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 1.2e-06 57.4 122 33.6
Ah.02g118860 Amaranthus hybridus HOM05D001750 ORTHO05D001825 1.5e-06 57.0 104 39.4
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.6e-06 56.2 72 43.1
Lj2A1235G104 Lonicera japonica HOM05D001750 ORTHO05D001825 3.4e-06 55.8 127 37.8
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 4.4e-06 55.5 105 39.0
Psat4g179120 Pisum sativum HOM05D001750 ORTHO05D030195 7.6e-06 54.7 45 57.8
Glyma.11G081100 Glycine max HOM05D001750 ORTHO05D001825 9.9e-06 54.3 110 33.6
SHI09895 Sapria himalayana HOM05D001750 ORTHO05D001825 9.9e-06 54.3 103 36.9


User provided reference genes

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