Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 0.0e+00 1546.9 809 100.0
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 0.0e+00 1112.1 834 77.5
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 7.9e-67 259.6 343 44.9
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 3.9e-66 257.3 360 43.6
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 5.1e-66 256.9 309 47.2
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 5.1e-66 256.9 309 47.2
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.1e-65 255.8 271 50.6
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 1.1e-65 255.8 320 44.7
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 2.0e-65 255.0 360 43.3
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 7.4e-65 253.1 326 43.9
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 1.3e-64 252.3 300 47.7
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.2e-64 251.5 371 43.1
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 2.8e-64 251.1 290 48.6
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 3.7e-64 250.8 372 43.3
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 3.7e-64 250.8 309 46.3
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 3.7e-64 250.8 273 49.1
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 4.8e-64 250.4 277 49.5
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 6.3e-64 250.0 326 43.6
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 6.3e-64 250.0 301 48.2
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 8.2e-64 249.6 295 47.8
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 8.2e-64 249.6 309 46.6
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 1.4e-63 248.8 273 50.9
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 1.4e-63 248.8 326 43.3
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.4e-63 248.8 295 47.8
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 2.4e-63 248.1 363 42.1
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 2.4e-63 248.1 314 46.5
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 3.1e-63 247.7 312 46.5
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 3.1e-63 247.7 290 47.9
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 4.1e-63 247.3 297 47.8
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 5.3e-63 246.9 302 44.7
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 5.3e-63 246.9 324 44.1
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 6.9e-63 246.5 302 47.4
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.2e-62 245.7 309 44.7
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 1.2e-62 245.7 332 45.2
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 1.2e-62 245.7 290 45.9
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.2e-62 245.7 366 40.4
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 1.5e-62 245.4 348 44.0
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 2.0e-62 245.0 299 46.5
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 2.0e-62 245.0 352 42.0
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 3.4e-62 244.2 379 40.1
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 4.5e-62 243.8 330 44.2
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 4.5e-62 243.8 364 41.8
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 4.5e-62 243.8 273 48.0
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 5.9e-62 243.4 321 44.5
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 5.9e-62 243.4 275 46.2
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 7.7e-62 243.0 283 49.8
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.3e-61 242.3 389 39.3
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.3e-61 242.3 349 41.8
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 1.7e-61 241.9 275 45.8
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 2.2e-61 241.5 398 41.2
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 2.9e-61 241.1 380 40.5
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 5.0e-61 240.4 289 46.7
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 5.0e-61 240.4 378 41.5
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 6.5e-61 240.0 275 46.2
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 6.5e-61 240.0 303 47.5
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 8.5e-61 239.6 272 49.6
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 8.5e-61 239.6 311 44.4
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 1.4e-60 238.8 293 45.4
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 1.4e-60 238.8 363 41.6
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.9e-60 238.4 294 44.9
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 1.9e-60 238.4 353 40.2
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 2.5e-60 238.0 274 46.4
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 5.5e-60 236.9 280 46.4
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 7.2e-60 236.5 382 40.3
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 7.2e-60 236.5 323 45.2
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 7.2e-60 236.5 288 44.8
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 9.4e-60 236.1 273 46.2
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 1.2e-59 235.7 312 45.8
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 3.6e-59 234.2 299 46.5
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 3.6e-59 234.2 363 39.1
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 4.7e-59 233.8 299 46.2
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 4.7e-59 233.8 299 46.2
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 4.7e-59 233.8 316 45.6
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 4.7e-59 233.8 397 39.8
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 6.1e-59 233.4 288 46.9
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 6.1e-59 233.4 299 45.8
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 6.1e-59 233.4 277 47.7
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 6.1e-59 233.4 277 47.7
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.4e-58 232.3 327 42.8
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 1.4e-58 232.3 306 45.8
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.8e-58 231.9 365 41.4
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 3.0e-58 231.1 313 46.0
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 3.0e-58 231.1 290 44.8
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 3.0e-58 231.1 296 46.3
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 3.9e-58 230.7 276 47.5
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 3.9e-58 230.7 350 40.6
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 5.1e-58 230.3 289 44.6
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 6.7e-58 229.9 279 47.0
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 8.8e-58 229.6 267 45.7
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 8.8e-58 229.6 326 43.6
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 8.8e-58 229.6 338 41.7
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 2.0e-57 228.4 294 45.6
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 2.0e-57 228.4 294 45.2
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 5.7e-57 226.9 273 46.9
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.7e-56 225.3 364 39.8
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 8.2e-56 223.0 363 39.1
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 8.2e-56 223.0 368 39.1
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 1.1e-55 222.6 241 48.5
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.1e-55 222.6 241 48.5
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 1.8e-55 221.9 309 42.7
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.8e-55 221.9 299 44.1
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 1.8e-55 221.9 300 45.3
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 3.1e-55 221.1 366 40.2
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 7.0e-55 219.9 384 40.6
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 7.0e-55 219.9 297 44.1
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 7.0e-55 219.9 371 38.5
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 9.1e-55 219.5 314 44.6
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.2e-54 219.2 294 45.6
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 4.5e-54 217.2 371 39.4
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 4.5e-54 217.2 371 39.4
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 4.5e-54 217.2 315 42.2
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 1.0e-53 216.1 287 46.3
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 1.0e-53 216.1 288 46.2
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 1.0e-53 216.1 287 46.3
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 2.9e-53 214.5 327 40.1
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 3.8e-53 214.2 387 39.8
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 5.0e-53 213.8 368 40.8
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 5.0e-53 213.8 361 38.2
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 6.5e-53 213.4 289 46.7
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 8.5e-53 213.0 284 47.2
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 8.5e-53 213.0 336 39.0
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 7.2e-52 209.9 276 44.6
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.6e-51 208.8 328 39.6
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.6e-51 208.8 323 39.3
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.8e-48 197.2 368 38.6
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 1.1e-47 196.1 269 40.1
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 1.1e-47 196.1 290 42.4
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 9.1e-47 193.0 219 48.9
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 7.5e-41 173.3 200 46.5
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.1e-39 169.5 269 40.5
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 2.7e-38 164.9 211 45.5
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 5.0e-37 160.6 378 32.0
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 7.2e-36 156.8 266 37.2
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.3e-34 151.8 189 45.0
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 2.3e-34 151.8 154 51.3
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.7e-32 145.6 185 44.3
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.4e-31 142.5 206 42.7
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 2.1e-27 128.6 193 39.4
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 1.7e-24 119.0 319 34.2
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 4.6e-22 110.9 157 43.9
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 2.1e-19 102.1 113 51.3
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 7.5e-17 93.6 98 50.0
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 5.4e-15 87.4 94 48.9
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 2.6e-09 68.6 292 26.0
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 2.6e-09 68.6 64 48.4
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 2.9e-08 65.1 91 41.8
MSTRG.2960 Avicennia marina HOM05D000926 ORTHO05D000707 4.9e-08 64.3 95 43.2
Os06g0654400 Oryza sativa ssp. japonica HOM05D000926 ORTHO05D000707 8.3e-08 63.5 112 37.5
Sed0014083 Sechium edule HOM05D000926 ORTHO05D000707 8.3e-08 63.5 131 38.9
TAR626G0668 Trochodendron aralioides HOM05D000926 ORTHO05D000707 1.4e-07 62.8 97 41.2
TAR636G2923 Trochodendron aralioides HOM05D000926 ORTHO05D000707 1.4e-07 62.8 125 38.4
BcaC03g14134 Brassica carinata HOM05D000926 ORTHO05D000707 3.2e-07 61.6 137 35.8
THA.LOC104811814 Tarenaya hassleriana HOM05D000926 ORTHO05D000707 4.1e-07 61.2 113 38.1
Lalb_Chr13g0300411 Lupinus albus HOM05D000926 ORTHO05D000707 5.4e-07 60.8 97 41.2
Mapoly0054s0107 Marchantia polymorpha HOM05D000926 ORTHO05D000707 5.4e-07 60.8 117 40.2
Aqoxy3G00596 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 9.2e-07 60.1 106 41.5
arahy.Tifrunner.gnm1.ann1.0G1U1N Arachis hypogaea HOM05D000926 ORTHO05D000707 9.2e-07 60.1 138 34.8
EL10Ac2g02434 Beta vulgaris HOM05D000926 ORTHO05D000707 9.2e-07 60.1 123 38.2
Manes.06G028600 Manihot esculenta HOM05D000926 ORTHO05D000707 9.2e-07 60.1 139 36.0
Ah.09g229670 Amaranthus hybridus HOM05D000926 ORTHO05D000707 1.2e-06 59.7 117 38.5
Os08g0446800 Oryza sativa ssp. japonica HOM05D000926 ORTHO05D000707 1.2e-06 59.7 122 39.3
Rhsim01G0009200 Rhododendron simsii HOM05D000926 ORTHO05D000707 1.2e-06 59.7 98 38.8
Nn8g40369 Nelumbo nucifera HOM05D000926 ORTHO05D000707 1.6e-06 59.3 131 36.6
Atru.chr7.574 Acer truncatum HOM05D000926 ORTHO05D000707 2.1e-06 58.9 116 37.1
BolC2t07523H Brassica oleracea HOM05D000926 ORTHO05D000707 2.1e-06 58.9 137 35.0
Dinv41288 Davidia involucrata HOM05D000926 ORTHO05D000707 2.1e-06 58.9 130 32.3
Manes.03G005800 Manihot esculenta HOM05D000926 ORTHO05D000707 2.1e-06 58.9 128 36.7
Cpa.g.sc95.79 Carica papaya HOM05D000926 ORTHO05D000707 2.7e-06 58.5 130 36.2
QL02p063891 Quercus lobata HOM05D000926 ORTHO05D000707 3.5e-06 58.2 111 36.9
HPP92_017153 Vanilla planifolia HOM05D000926 ORTHO05D000707 3.5e-06 58.2 122 38.5
Zm00001eb389560 Zea mays HOM05D000926 ORTHO05D000707 3.5e-06 58.2 133 37.6
CiPaw.03G080100 Carya illinoinensis HOM05D000926 ORTHO05D000707 4.6e-06 57.8 112 34.8
AUR62020304 Chenopodium quinoa HOM05D000926 ORTHO05D000707 4.6e-06 57.8 94 42.6
Medtr0542s0020 Medicago truncatula HOM05D000926 ORTHO05D000707 4.6e-06 57.8 102 38.2
SMO118G0315 Selaginella moellendorffii HOM05D002617 ORTHO05D375115 4.6e-06 57.8 98 51.0
Dinv34883 Davidia involucrata HOM05D000926 ORTHO05D000707 6.0e-06 57.4 113 38.1
Lsat_1_v5_gn_8_66741 Lactuca sativa HOM05D000926 ORTHO05D000707 6.0e-06 57.4 96 40.6
Lj4g0013069 Lotus japonicus HOM05D000926 ORTHO05D000707 6.0e-06 57.4 96 39.6
Potri.004G108440 Populus trichocarpa HOM05D000926 ORTHO05D000707 6.0e-06 57.4 100 40.0
TWI34G1315 Tripterygium wilfordii HOM05D000926 ORTHO05D000707 6.0e-06 57.4 100 39.0
HPP92_018521 Vanilla planifolia HOM05D000926 ORTHO05D000707 6.0e-06 57.4 133 31.6
Cc08_g06360 Coffea canephora HOM05D000926 ORTHO05D000707 7.8e-06 57.0 95 43.2
Eucgr.C04021 Eucalyptus grandis HOM05D000926 ORTHO05D000707 7.8e-06 57.0 129 36.4
Sopen08g002480 Solanum pennellii HOM05D000926 ORTHO05D000707 7.8e-06 57.0 154 32.5
PGSC0003DMG400001477 Solanum tuberosum HOM05D000926 ORTHO05D000707 7.8e-06 57.0 95 35.8
TWI32G1064 Tripterygium wilfordii HOM05D000926 ORTHO05D000707 7.8e-06 57.0 97 38.1


User provided reference genes

Program Settings