Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO004G0005 Selaginella moellendorffii HOM05D002996 ORTHO05D379401 6.1e-166 587.4 298 100.0
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 1.0e-19 101.7 127 48.0
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 1.3e-14 84.7 202 35.1
FAN09G1552 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.7e-11 74.3 100 45.0
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 1.7e-11 74.3 207 30.4
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 5.1e-11 72.8 207 30.0
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 5.1e-11 72.8 236 30.9
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 5.1e-11 72.8 207 30.9
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 6.6e-11 72.4 207 30.0
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 8.6e-11 72.0 206 30.6
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 8.6e-11 72.0 207 30.9
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 8.6e-11 72.0 207 30.4
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.1e-10 71.6 207 30.0
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 1.1e-10 71.6 207 30.0
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 1.5e-10 71.2 199 31.7
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.5e-10 71.2 207 30.0
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 1.5e-10 71.2 204 31.4
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.5e-10 71.2 207 30.4
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.5e-10 71.2 198 31.3
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 1.5e-10 71.2 207 30.4
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 1.5e-10 71.2 207 30.4
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 1.9e-10 70.9 215 31.2
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.9e-10 70.9 207 30.0
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 1.9e-10 70.9 198 30.8
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 2.5e-10 70.5 207 30.0
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.5e-10 70.5 198 31.3
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 3.3e-10 70.1 207 30.4
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 3.3e-10 70.1 204 30.9
SEGI_30841 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 3.3e-10 70.1 91 48.4
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 3.3e-10 70.1 207 30.4
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 4.3e-10 69.7 207 29.5
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 4.3e-10 69.7 220 28.2
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 4.3e-10 69.7 207 30.0
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 4.3e-10 69.7 207 30.0
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 4.3e-10 69.7 207 30.0
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 4.3e-10 69.7 207 30.4
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 5.6e-10 69.3 207 30.4
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 5.6e-10 69.3 207 29.5
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 5.6e-10 69.3 206 29.6
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 5.6e-10 69.3 206 29.6
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 5.6e-10 69.3 206 30.1
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 7.3e-10 68.9 204 29.9
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 7.3e-10 68.9 83 49.4
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 7.3e-10 68.9 207 29.5
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 7.3e-10 68.9 207 30.0
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 7.3e-10 68.9 207 30.4
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 7.3e-10 68.9 207 30.4
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 7.3e-10 68.9 207 30.4
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 7.3e-10 68.9 208 30.3
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 9.5e-10 68.6 207 29.5
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 9.5e-10 68.6 207 30.0
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 9.5e-10 68.6 207 29.5
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 9.5e-10 68.6 206 30.6
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 1.2e-09 68.2 203 31.0
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 1.2e-09 68.2 204 30.4
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 1.2e-09 68.2 91 45.1
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 1.2e-09 68.2 208 30.8
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 1.2e-09 68.2 207 29.5
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 1.2e-09 68.2 206 30.6
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 1.2e-09 68.2 207 29.5
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.6e-09 67.8 204 29.4
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 1.6e-09 67.8 198 31.3
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 2.1e-09 67.4 207 29.5
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.1e-09 67.4 207 29.5
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 2.1e-09 67.4 207 30.0
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 2.1e-09 67.4 207 29.5
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.8e-09 67.0 207 30.0
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 2.8e-09 67.0 207 29.0
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 2.8e-09 67.0 207 30.0
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 2.8e-09 67.0 207 29.5
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 3.6e-09 66.6 204 29.4
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 3.6e-09 66.6 207 29.0
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 3.6e-09 66.6 115 42.6
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 4.7e-09 66.2 207 29.0
Cpa.g.sc604.6 Carica papaya HOM05D002996 ORTHO05D003536 4.7e-09 66.2 207 29.0
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 4.7e-09 66.2 246 28.5
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 4.7e-09 66.2 198 30.8
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 4.7e-09 66.2 102 39.2
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 4.7e-09 66.2 108 40.7
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 6.2e-09 65.9 202 29.7
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 6.2e-09 65.9 207 29.0
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 6.2e-09 65.9 229 27.9
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 6.2e-09 65.9 207 29.5
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 6.2e-09 65.9 207 28.5
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 6.2e-09 65.9 207 30.0
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 28.0
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 28.0
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 8.1e-09 65.5 204 29.9
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 28.0
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 28.0
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 28.0
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 28.0
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 28.0
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 28.0
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 30.0
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 28.0
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 28.0
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 8.1e-09 65.5 198 30.8
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 8.1e-09 65.5 209 29.7
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 8.1e-09 65.5 88 43.2
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 8.1e-09 65.5 88 43.2
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 8.1e-09 65.5 88 43.2
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 8.1e-09 65.5 207 29.5
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.1e-08 65.1 227 29.5
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 1.1e-08 65.1 246 28.5
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 1.1e-08 65.1 91 44.0
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 1.1e-08 65.1 207 28.0
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.1e-08 65.1 198 30.3
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.1e-08 65.1 207 29.5
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 1.8e-08 64.3 204 29.4
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 1.8e-08 64.3 198 29.3
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 1.8e-08 64.3 204 29.4
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 1.8e-08 64.3 207 28.5
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 2.3e-08 63.9 204 28.4
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 2.3e-08 63.9 223 27.8
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 2.3e-08 63.9 206 27.7
CsaV3_1G027810 Cucumis sativus L. HOM05D002996 ORTHO05D003536 3.1e-08 63.5 119 41.2
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 3.1e-08 63.5 207 28.0
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.1e-08 63.5 213 28.6
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 4.0e-08 63.2 207 27.5
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 4.0e-08 63.2 207 27.5
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 4.0e-08 63.2 207 27.5
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 4.0e-08 63.2 207 27.5
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 4.0e-08 63.2 207 27.5
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 4.0e-08 63.2 207 27.5
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 5.2e-08 62.8 204 28.9
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 5.2e-08 62.8 207 29.5
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 5.2e-08 62.8 241 28.2
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 8.9e-08 62.0 280 27.9
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.2e-07 61.6 205 29.3
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 1.2e-07 61.6 198 28.8
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 1.2e-07 61.6 88 42.0
Actinidia17657 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.5e-07 61.2 81 46.9
vmacro05502 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.4e-07 60.1 81 46.9
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 7.6e-07 58.9 82 47.6
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 9.9e-07 58.5 96 40.6
vmacro05509 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 4.9e-06 56.2 242 28.9
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 6.4e-06 55.8 89 40.4
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 8.4e-06 55.5 207 26.1
vmacro05505 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 8.4e-06 55.5 88 39.8


User provided reference genes

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