Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.5e-77 292.7 144 100.0
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 8.9e-62 240.4 138 87.0
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 5.0e-57 224.6 145 73.8
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.5e-56 222.2 145 73.1
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.6e-55 219.5 145 71.7
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 2.1e-55 219.2 145 71.7
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 3.6e-55 218.4 145 71.7
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 3.6e-55 218.4 145 71.7
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 4.7e-55 218.0 145 70.3
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 4.7e-55 218.0 145 71.0
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 8.0e-55 217.2 146 69.9
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 1.0e-54 216.9 145 71.0
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 1.0e-54 216.9 145 70.3
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.4e-54 216.5 146 72.6
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.4e-54 216.5 140 74.3
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.4e-54 216.5 145 71.0
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 2.3e-54 215.7 139 74.8
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 2.3e-54 215.7 139 74.8
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 3.0e-54 215.3 146 69.2
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 3.0e-54 215.3 145 69.7
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 5.2e-54 214.5 145 70.3
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.2e-53 213.4 139 72.7
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.5e-53 213.0 145 73.1
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.5e-53 213.0 145 73.1
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.0e-53 212.6 145 68.3
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 2.6e-53 212.2 145 71.0
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.6e-53 212.2 136 72.8
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 3.4e-53 211.8 145 68.3
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 3.4e-53 211.8 145 68.3
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 3.4e-53 211.8 136 73.5
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 3.4e-53 211.8 145 68.3
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.4e-53 211.8 145 69.7
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.4e-53 211.8 145 69.7
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 3.4e-53 211.8 145 68.3
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 4.4e-53 211.5 145 69.7
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 5.8e-53 211.1 145 70.3
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 7.5e-53 210.7 145 69.0
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 7.5e-53 210.7 145 69.0
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 7.5e-53 210.7 140 72.9
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.3e-52 209.9 136 72.1
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.3e-52 209.9 136 72.1
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 1.3e-52 209.9 138 72.5
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.7e-52 209.5 145 69.7
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.2e-52 209.1 145 71.0
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.2e-52 209.1 145 71.7
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 2.9e-52 208.8 145 71.7
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 3.7e-52 208.4 139 69.8
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 4.9e-52 208.0 136 73.5
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 6.4e-52 207.6 139 69.8
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.1e-51 206.8 135 71.9
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.4e-51 206.5 142 69.7
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.4e-51 206.5 142 69.7
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.4e-51 206.5 140 71.4
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.4e-51 206.5 145 66.2
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.8e-51 206.1 139 71.2
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.8e-51 206.1 145 70.3
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 2.4e-51 205.7 136 70.6
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 2.4e-51 205.7 145 71.0
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.2e-51 205.3 145 66.2
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.2e-51 205.3 140 69.3
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 3.2e-51 205.3 139 70.5
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.2e-51 205.3 136 69.9
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 3.2e-51 205.3 140 70.7
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 3.2e-51 205.3 146 68.5
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 4.1e-51 204.9 139 70.5
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 4.1e-51 204.9 139 70.5
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 4.1e-51 204.9 139 70.5
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 4.1e-51 204.9 139 70.5
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 4.1e-51 204.9 139 70.5
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 4.1e-51 204.9 139 70.5
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 5.4e-51 204.5 135 71.1
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 5.4e-51 204.5 139 70.5
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.4e-51 204.5 139 70.5
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 9.2e-51 203.8 139 69.8
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 9.2e-51 203.8 139 67.6
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 9.2e-51 203.8 140 69.3
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 9.2e-51 203.8 141 68.8
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-50 203.4 145 64.8
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.2e-50 203.4 139 69.8
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.2e-50 203.4 139 69.1
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.2e-50 203.4 139 69.1
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.6e-50 203.0 145 66.9
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 1.6e-50 203.0 136 69.9
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 3.5e-50 201.8 139 69.8
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 3.5e-50 201.8 136 69.1
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.5e-50 201.8 140 68.6
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 3.5e-50 201.8 136 69.9
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 4.6e-50 201.4 135 70.4
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 4.6e-50 201.4 135 71.1
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 4.6e-50 201.4 136 69.1
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 6.0e-50 201.1 138 68.1
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 6.0e-50 201.1 138 68.1
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.0e-49 200.3 136 69.1
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.0e-49 200.3 143 66.4
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.0e-49 200.3 140 68.6
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.3e-49 199.9 139 68.3
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.3e-49 199.9 139 68.3
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.7e-49 199.5 139 68.3
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 2.3e-49 199.1 140 67.9
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 5.0e-49 198.0 138 71.0
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 2.5e-48 195.7 142 68.3
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 2.5e-48 195.7 139 69.1
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 5.6e-48 194.5 138 67.4
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 5.6e-48 194.5 138 67.4
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 9.5e-48 193.7 99 96.0
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 4.7e-47 191.4 139 68.3
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 7.8e-42 174.1 136 62.5
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.3e-40 168.7 148 58.1
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 5.6e-40 167.9 148 57.4
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 5.6e-40 167.9 148 57.4
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.6e-40 167.9 148 57.4
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 7.3e-40 167.5 148 57.4
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 7.3e-40 167.5 148 57.4
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 7.3e-40 167.5 113 69.0
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 9.5e-40 167.2 148 56.8
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 9.5e-40 167.2 148 56.8
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 9.5e-40 167.2 148 56.8
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 9.5e-40 167.2 106 73.6
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 2.8e-39 165.6 148 56.1
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 2.8e-39 165.6 148 56.1
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 6.2e-39 164.5 148 56.8
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.8e-38 162.9 148 56.8
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 4.0e-38 161.8 148 55.4
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 6.8e-38 161.0 144 52.8
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.3e-36 156.8 147 53.1
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.9e-35 152.9 144 50.7
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 3.5e-34 148.7 140 52.9
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 3.9e-33 145.2 144 50.0
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 3.0e-25 119.0 79 69.6
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 2.5e-24 115.9 79 68.4
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 2.0e-21 106.3 144 41.7
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 2.6e-21 105.9 105 53.3
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 7.6e-21 104.4 147 40.8
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 9.9e-21 104.0 147 41.5
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 4.9e-20 101.7 134 39.6
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.6e-18 96.7 65 76.9
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.5e-18 95.5 147 38.1
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.3e-16 89.0 109 45.0
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 7.3e-16 87.8 68 55.9
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 1.4e-14 83.6 68 58.8
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 1.2e-13 80.5 147 32.7
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.5e-13 80.1 147 32.0
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 3.4e-13 79.0 64 59.4
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.2e-12 76.3 80 50.0
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.9e-12 75.9 57 63.2
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 6.4e-12 74.7 162 31.5
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.6e-10 70.1 104 38.5


User provided reference genes

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