Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 2.1e-171 605.5 294 100.0
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 1.2e-158 563.1 290 95.5
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.2e-144 515.8 293 88.4
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 6.7e-141 504.2 292 87.3
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.3e-140 501.9 293 85.3
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 4.3e-140 501.5 293 85.3
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 9.7e-140 500.4 292 87.0
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 9.7e-140 500.4 292 87.0
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 4.8e-139 498.0 295 84.7
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 4.8e-139 498.0 295 84.7
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 6.3e-139 497.7 292 85.6
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.1e-138 496.9 293 86.0
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.8e-138 496.1 293 85.7
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.8e-138 496.1 293 85.7
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 9.1e-138 493.8 292 85.3
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 9.1e-138 493.8 292 86.3
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 4.5e-137 491.5 296 85.1
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.6e-134 481.9 303 82.2
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 6.1e-134 481.1 295 83.1
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 6.1e-134 481.1 287 84.7
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.4e-133 479.9 292 83.6
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.8e-133 479.6 295 82.7
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.8e-133 479.6 287 84.3
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 2.3e-133 479.2 287 84.3
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 5.1e-133 478.0 287 84.0
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 5.1e-133 478.0 287 84.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 8.8e-133 477.2 292 82.9
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 8.8e-133 477.2 292 82.9
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 8.8e-133 477.2 292 82.9
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 8.8e-133 477.2 292 82.9
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 9.7e-132 473.8 287 84.0
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 9.7e-132 473.8 293 81.9
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.3e-131 473.4 293 82.3
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-131 472.6 292 81.2
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.4e-130 469.9 292 81.5
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.0e-128 461.5 271 85.2
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 6.7e-125 451.1 295 79.7
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 6.7e-125 451.1 295 79.7
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 6.7e-125 451.1 295 79.7
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 6.7e-125 451.1 295 79.7
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 6.7e-125 451.1 295 79.7
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 6.7e-125 451.1 295 79.7
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 3.7e-123 445.3 295 78.3
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.7e-123 445.3 292 79.8
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 4.8e-123 444.9 295 78.6
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.2e-123 444.1 293 79.2
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.2e-123 444.1 293 79.2
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.0e-122 441.0 260 85.4
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 9.1e-122 440.7 218 97.7
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 7.7e-113 411.0 289 72.7
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.4e-111 404.1 281 76.5
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 6.8e-109 397.9 218 90.4
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 9.2e-98 360.9 273 71.8
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 3.3e-95 352.4 253 72.3
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 4.0e-93 345.5 222 80.2
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 6.8e-93 344.7 224 80.4
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 5.8e-92 341.7 292 64.0
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 6.0e-81 305.1 287 61.7
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-79 300.8 196 77.6
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-79 300.8 196 77.6
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 2.0e-76 290.0 284 59.2
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.6e-76 288.1 290 57.9
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.9e-74 283.5 290 54.8
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.6e-73 280.4 290 54.5
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.3e-64 250.0 164 81.7
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 8.4e-59 231.5 150 83.3
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.2e-57 227.6 158 79.1
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 6.0e-57 225.3 143 74.1
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 1.0e-56 224.6 120 85.0
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.3e-56 223.4 207 61.4
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.2e-54 215.3 197 64.5
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 8.1e-54 214.9 148 71.6
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 3.8e-51 206.1 119 79.8
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 1.9e-47 193.7 133 80.5
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 2.8e-46 189.9 106 90.6
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 2.8e-46 189.9 106 90.6
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 7.6e-44 181.8 106 86.8
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.2e-43 180.3 106 85.8
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 4.2e-42 176.0 106 85.8
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 7.1e-42 175.3 106 86.8
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 7.1e-42 175.3 106 86.8
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.2e-41 174.5 100 90.0
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-41 174.5 100 90.0
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 2.1e-41 173.7 106 84.0
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 3.5e-41 172.9 106 85.8
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.0e-40 171.4 100 89.0
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 2.3e-40 170.2 101 87.1
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.5e-39 166.8 160 60.6
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 5.7e-39 165.6 100 88.0
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 9.6e-39 164.9 110 73.6
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.8e-38 162.5 106 81.1
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.5e-36 156.0 90 84.4
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.3e-35 154.5 95 80.0
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 5.0e-35 152.5 101 79.2
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.2e-34 149.8 93 86.0
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.5e-34 149.1 148 56.8
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 3.6e-33 146.4 106 73.6
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.5e-26 123.6 85 72.9
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 4.2e-26 122.9 88 73.9
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 3.3e-23 113.2 64 87.5
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-22 110.9 71 73.2
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.4e-21 107.8 62 85.5
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 6.9e-21 105.5 138 44.9
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.9e-20 102.4 74 73.0
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 4.2e-18 96.3 71 64.8
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.5e-18 95.9 169 39.1
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.0e-16 90.1 50 84.0
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.3e-15 86.7 48 85.4
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 3.3e-15 86.7 45 88.9
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 1.3e-14 84.7 56 78.6
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-14 84.3 56 76.8
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 3.7e-14 83.2 56 76.8
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 4.1e-13 79.7 48 81.2
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.5e-11 72.4 49 71.4
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.5e-10 71.2 50 70.0
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-10 71.2 47 76.6
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 1.0e-08 65.1 29 93.1
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 4.0e-08 63.2 51 60.8
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.4e-07 59.7 43 67.4
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 9.7e-07 58.5 45 62.2
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 1.7e-06 57.8 49 69.4
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 4.8e-06 56.2 28 92.9
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 8.2e-06 55.5 35 77.1


User provided reference genes

Program Settings