Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 8.9e-125 450.3 228 100.0
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 8.9e-125 450.3 228 100.0
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 1.0e-51 207.6 219 56.2
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.7e-51 206.8 211 56.9
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 5.0e-51 205.3 224 54.9
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 8.5e-51 204.5 188 61.7
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 1.1e-50 204.1 225 52.4
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 1.9e-50 203.4 171 63.7
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 3.2e-50 202.6 190 60.0
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.2e-50 202.6 185 61.1
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 4.2e-50 202.2 187 61.5
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 4.2e-50 202.2 190 60.0
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.2e-50 201.4 186 60.2
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 9.4e-50 201.1 185 60.5
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 9.4e-50 201.1 185 60.5
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 9.4e-50 201.1 185 60.5
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 2.7e-49 199.5 180 61.7
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 2.7e-49 199.5 199 59.8
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 3.6e-49 199.1 213 54.9
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 4.7e-49 198.7 177 62.7
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.0e-48 197.6 214 53.3
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 1.4e-48 197.2 177 61.6
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.4e-48 197.2 177 61.6
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.8e-48 196.8 177 59.9
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 1.8e-48 196.8 190 58.4
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 2.3e-48 196.4 190 57.4
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.3e-48 196.4 182 61.0
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 4.0e-48 195.7 206 53.4
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 4.0e-48 195.7 198 56.6
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 5.2e-48 195.3 195 55.4
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 5.2e-48 195.3 180 62.8
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 5.2e-48 195.3 182 60.4
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 5.2e-48 195.3 190 57.9
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 6.8e-48 194.9 184 62.0
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 6.8e-48 194.9 168 64.3
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 8.8e-48 194.5 177 61.0
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 1.2e-47 194.1 193 58.0
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.2e-47 194.1 190 58.4
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 2.0e-47 193.4 177 60.5
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 2.0e-47 193.4 175 60.6
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.6e-47 193.0 195 55.9
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.6e-47 193.0 177 59.9
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 3.4e-47 192.6 177 61.0
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 4.4e-47 192.2 177 59.3
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 5.7e-47 191.8 177 58.8
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 5.7e-47 191.8 198 57.1
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 7.5e-47 191.4 182 59.3
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 9.8e-47 191.0 190 54.7
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.3e-46 190.7 177 57.6
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 1.7e-46 190.3 177 61.0
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.7e-46 190.3 177 61.6
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 2.2e-46 189.9 177 59.3
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.2e-46 189.9 177 57.6
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.2e-46 189.9 177 57.6
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 2.2e-46 189.9 225 49.3
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 2.8e-46 189.5 193 55.4
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 4.8e-46 188.7 217 52.5
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 1.8e-45 186.8 214 51.4
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.4e-45 186.4 185 55.7
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 9.1e-45 184.5 174 58.0
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.6e-44 183.7 179 57.0
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 2.7e-44 183.0 168 60.1
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 2.7e-44 183.0 179 56.4
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 3.5e-44 182.6 177 58.8
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 4.5e-44 182.2 151 68.2
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 5.9e-44 181.8 168 58.9
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 7.7e-44 181.4 177 55.4
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.7e-43 180.3 213 48.8
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.8e-43 179.1 176 57.4
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 5.0e-43 178.7 172 59.9
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 6.5e-43 178.3 192 54.2
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 6.5e-43 178.3 191 53.9
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 6.5e-43 178.3 164 59.1
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 8.5e-43 177.9 150 62.0
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 1.1e-42 177.6 191 55.5
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 1.1e-42 177.6 184 57.6
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.9e-42 176.8 186 53.8
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.2e-42 176.0 163 60.7
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.2e-42 176.0 163 61.3
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 4.2e-42 175.6 186 50.5
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 5.5e-42 175.3 178 56.2
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 7.2e-42 174.9 186 51.1
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 7.2e-42 174.9 208 51.4
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 7.2e-42 174.9 164 60.4
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 3.6e-41 172.6 179 53.1
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 6.1e-41 171.8 151 60.9
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 1.4e-40 170.6 164 57.3
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.3e-40 169.9 164 55.5
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 6.8e-40 168.3 161 56.5
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 8.8e-40 167.9 188 51.1
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 8.8e-40 167.9 188 51.1
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.5e-39 167.2 151 60.3
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 1.5e-39 167.2 151 58.9
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 1.5e-39 167.2 187 54.0
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.0e-39 166.8 164 54.9
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 4.4e-39 165.6 159 56.6
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 5.7e-39 165.2 163 56.4
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 5.7e-39 165.2 194 49.0
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 9.8e-39 164.5 188 50.0
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 1.3e-38 164.1 177 49.7
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 1.3e-38 164.1 163 54.6
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 1.3e-38 164.1 163 54.6
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 1.3e-38 164.1 163 54.6
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 3.7e-38 162.5 189 47.6
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 3.7e-38 162.5 189 47.6
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 4.9e-38 162.2 162 53.1
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 4.9e-38 162.2 162 53.1
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 4.9e-38 162.2 162 53.1
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 4.9e-38 162.2 163 53.4
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 6.3e-38 161.8 163 53.4
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 6.3e-38 161.8 163 52.8
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 1.4e-37 160.6 145 60.7
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 1.8e-37 160.2 151 60.3
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 1.8e-37 160.2 150 59.3
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 1.8e-37 160.2 139 61.9
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 2.4e-37 159.8 151 58.9
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 3.1e-37 159.5 163 52.1
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 3.1e-37 159.5 175 53.1
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 2.7e-36 156.4 151 56.3
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 2.7e-36 156.4 167 52.7
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 2.7e-36 156.4 167 52.7
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 3.5e-36 156.0 151 56.3
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 4.5e-36 155.6 151 59.6
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 4.5e-36 155.6 151 58.9
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 6.6e-35 151.8 134 61.2
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 6.6e-35 151.8 132 61.4
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.3e-34 149.4 111 68.5
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.6e-33 146.0 166 51.2
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 3.6e-33 146.0 151 54.3
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.7e-33 145.6 140 60.0
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 2.3e-32 143.3 135 55.6
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 2.3e-32 143.3 163 47.9
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 4.4e-31 139.0 151 49.7
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.2e-28 131.0 104 66.3
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 1.7e-27 127.1 169 47.3
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 8.6e-27 124.8 189 41.3
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.1e-26 124.4 105 63.8
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.1e-26 124.4 105 63.8
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 1.5e-26 124.0 133 50.4
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 3.3e-26 122.9 188 40.4
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 1.6e-25 120.6 177 44.1
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 3.1e-24 116.3 154 46.1
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 1.1e-16 91.3 134 41.8
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 1.4e-16 90.9 139 41.0
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 2.3e-16 90.1 139 39.6
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 2.1e-12 77.0 142 38.7
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 6.8e-08 62.0 80 45.0
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 5.8e-07 58.9 167 28.7


User provided reference genes

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