Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.0e-226 787.7 387 100.0
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.0e-181 640.2 390 84.6
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.0e-177 625.9 315 97.1
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.9e-175 619.4 389 83.5
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.9e-175 619.4 389 83.5
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.2e-175 618.6 391 82.4
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.6e-174 616.3 390 82.3
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.6e-174 616.3 390 82.3
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.7e-174 615.5 390 82.6
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.6e-174 615.1 389 82.8
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 3.6e-174 615.1 392 81.4
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 3.6e-174 615.1 392 81.4
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 7.9e-174 614.0 393 82.2
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.4e-173 613.2 391 81.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.1e-172 610.1 389 82.5
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 3.3e-172 608.6 382 82.5
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.1e-170 603.6 392 80.6
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.8e-170 602.8 400 79.8
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.1e-170 602.1 392 80.4
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 5.3e-170 601.3 383 81.2
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.5e-169 599.7 383 80.9
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 3.4e-169 598.6 383 80.9
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 3.4e-169 598.6 383 80.9
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 7.7e-169 597.4 383 80.7
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 6.5e-168 594.3 383 80.9
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 4.7e-166 588.2 389 78.9
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 6.1e-166 587.8 389 79.9
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.1e-166 587.8 389 79.9
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 6.1e-166 587.8 389 79.9
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 6.1e-166 587.8 389 79.9
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 6.1e-166 587.8 389 80.5
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.0e-165 587.0 392 80.4
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.8e-165 586.3 368 82.1
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 3.7e-163 578.6 315 91.1
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 7.7e-161 570.9 389 77.4
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 7.7e-161 570.9 390 77.2
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.2e-159 564.3 390 77.4
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.2e-159 564.3 390 77.4
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.6e-158 563.1 392 77.0
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 2.7e-158 562.4 290 95.5
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.1e-158 561.2 357 81.5
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.4e-157 560.1 392 76.3
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.1e-154 550.4 392 75.5
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.1e-154 550.4 392 75.5
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.1e-154 550.4 392 75.5
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.1e-154 550.4 392 75.5
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.1e-154 550.4 392 75.5
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.1e-154 550.4 392 75.5
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 6.5e-144 514.6 386 71.8
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.3e-141 506.1 340 79.1
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 3.0e-141 505.8 316 81.3
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 8.0e-134 481.1 319 79.0
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 2.0e-129 466.5 321 78.5
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.0e-125 454.1 389 66.1
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 5.1e-112 408.7 380 62.1
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.6e-112 407.9 387 61.2
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.0e-105 385.2 281 74.4
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.4e-98 364.0 247 80.2
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.1e-94 350.1 304 65.5
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 3.6e-94 349.4 273 70.7
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 8.1e-94 348.2 253 71.9
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.0e-88 331.3 294 65.3
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-87 327.8 203 84.2
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.4e-85 320.1 203 82.8
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.8e-83 312.8 203 81.8
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 4.9e-83 312.4 203 82.3
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 4.9e-83 312.4 203 82.3
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 6.0e-81 305.4 203 79.8
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 8.7e-80 301.6 203 80.3
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 9.6e-79 298.1 203 79.3
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 9.6e-79 298.1 203 78.8
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.3e-78 297.7 196 81.1
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-76 291.2 196 76.5
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-76 291.2 196 76.5
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 2.0e-76 290.4 196 80.1
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 5.8e-76 288.9 291 59.5
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 9.3e-74 281.6 186 81.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.3e-72 277.7 299 53.8
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.1e-71 274.6 299 53.5
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 4.3e-63 246.1 164 80.5
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 3.1e-61 240.0 177 72.9
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 5.3e-61 239.2 224 63.4
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.1e-57 227.3 147 78.9
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.0e-56 224.9 139 82.7
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 5.1e-56 222.6 120 85.8
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 5.1e-56 222.6 120 85.8
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 4.8e-54 216.1 121 89.3
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-53 214.9 145 76.6
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 1.5e-52 211.1 148 70.9
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.7e-51 207.6 125 83.2
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 1.4e-50 204.5 119 80.7
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.3e-47 193.4 140 75.0
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.7e-47 191.8 122 81.1
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.8e-45 187.6 118 78.0
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 2.4e-45 187.2 133 78.2
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 5.9e-44 182.6 132 69.7
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 4.2e-42 176.4 613 29.4
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.4e-39 166.4 166 59.6
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 5.7e-39 166.0 187 51.9
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 6.3e-38 162.5 110 72.7
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 4.1e-37 159.8 114 74.6
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.5e-34 150.6 93 84.9
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 2.1e-33 147.5 104 74.0
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.2e-32 142.9 101 75.2
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 7.5e-31 139.0 79 83.5
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 8.5e-27 125.6 94 71.3
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 2.7e-25 120.6 101 69.3
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.7e-25 120.6 101 69.3
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-24 118.2 88 71.6
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.4e-24 118.2 101 66.3
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 4.0e-24 116.7 71 77.5
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.2e-23 115.2 93 73.1
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 4.4e-23 113.2 94 69.1
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 2.2e-22 110.9 68 82.4
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 7.0e-21 105.9 88 65.9
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 1.6e-20 104.8 93 67.7
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.9e-20 102.8 62 82.3
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-19 101.3 73 69.9
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 2.3e-19 100.9 69 72.5
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-18 98.6 82 65.9
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-18 98.2 74 70.3
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.2e-18 96.7 169 39.1
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 2.8e-17 94.0 71 64.8
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 5.7e-15 86.3 63 71.4
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 7.5e-15 85.9 60 68.3
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 9.8e-15 85.5 82 59.8
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 3.7e-14 83.6 56 76.8
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 4.9e-14 83.2 56 75.0
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.2e-13 79.0 182 37.4
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.6e-12 78.2 76 61.8
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 2.0e-12 77.8 60 73.3
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 7.8e-12 75.9 48 79.2
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-10 71.6 44 79.5
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.9e-10 71.2 49 69.4
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 4.3e-10 70.1 47 74.5
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 1.4e-08 65.1 29 93.1
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 3.1e-08 63.9 51 66.7
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 6.8e-08 62.8 53 60.4
SHI11507 Sapria himalayana HOM05D003783 ORTHO05D364673 2.6e-07 60.8 44 65.9
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 4.4e-07 60.1 56 57.1
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 8.3e-06 55.8 49 67.3


User provided reference genes

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