Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 2.7e-115 418.7 213 100.0
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 2.7e-46 189.5 241 51.9
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 4.4e-41 172.2 242 45.9
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 6.3e-40 168.3 242 45.5
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 3.1e-39 166.0 241 44.8
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 4.1e-39 165.6 241 43.2
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 4.1e-39 165.6 241 44.4
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 4.1e-39 165.6 240 46.2
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.4e-39 165.2 241 44.4
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.2e-38 164.1 240 46.7
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 1.6e-38 163.7 241 47.3
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.1e-36 157.5 214 44.9
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.1e-36 157.5 243 44.4
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 1.6e-35 153.7 269 42.4
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 2.1e-35 153.3 244 43.4
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 2.7e-35 152.9 242 43.0
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 1.0e-34 151.0 244 45.5
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 3.0e-34 149.4 198 48.5
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 6.8e-34 148.3 241 44.4
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 6.8e-34 148.3 241 44.4
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.6e-33 146.4 242 43.0
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.6e-33 146.4 241 42.7
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.4e-33 146.0 242 42.1
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.4e-33 146.0 243 42.4
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.7e-32 143.7 242 43.8
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 2.2e-32 143.3 199 43.7
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.8e-32 142.9 247 42.5
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.7e-32 142.5 243 42.0
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.4e-31 140.6 243 40.7
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 3.1e-31 139.4 181 49.7
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 4.1e-31 139.0 236 41.5
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 5.4e-31 138.7 203 48.3
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 7.0e-31 138.3 220 42.3
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 9.2e-31 137.9 237 40.5
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 4.5e-30 135.6 244 42.2
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 5.9e-30 135.2 243 39.5
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.9e-30 135.2 176 45.5
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.7e-29 133.7 241 43.2
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.3e-29 133.3 215 42.8
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.3e-29 133.3 246 39.8
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 3.8e-29 132.5 241 39.8
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 3.8e-29 132.5 237 42.2
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 5.0e-29 132.1 263 39.5
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 6.6e-29 131.7 237 41.8
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 8.6e-29 131.3 247 42.5
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-28 130.6 216 42.1
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-28 130.6 221 42.1
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.9e-28 130.2 200 46.5
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 2.5e-28 129.8 197 42.6
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.5e-28 129.8 241 42.3
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 2.5e-28 129.8 239 39.7
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.5e-28 129.8 240 40.4
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 5.6e-28 128.6 214 43.5
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 9.5e-28 127.9 220 41.8
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 9.5e-28 127.9 243 40.7
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 9.5e-28 127.9 241 39.8
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 1.2e-27 127.5 242 39.7
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.2e-27 127.5 241 40.2
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 2.1e-27 126.7 240 38.8
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 2.1e-27 126.7 241 39.4
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 2.1e-27 126.7 296 35.8
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 4.7e-27 125.6 226 42.0
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 1.8e-26 123.6 240 38.8
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 1.8e-26 123.6 210 41.4
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.0e-26 122.9 201 39.8
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 6.8e-26 121.7 209 42.6
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 2.0e-25 120.2 223 38.6
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.6e-25 119.8 255 38.0
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.6e-25 119.8 236 37.7
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.6e-25 119.8 236 37.7
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 2.6e-25 119.8 236 39.4
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 3.4e-25 119.4 217 38.2
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.4e-25 119.0 191 40.8
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.4e-25 119.0 191 41.9
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.4e-25 119.0 191 41.9
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.8e-25 117.9 216 38.9
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 9.8e-25 117.9 242 39.3
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 9.8e-25 117.9 227 40.5
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.3e-24 117.5 201 38.3
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.3e-24 117.5 239 37.7
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.2e-24 116.7 240 36.7
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-24 116.3 190 43.7
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 4.9e-24 115.5 194 45.4
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 4.9e-24 115.5 237 40.5
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 4.9e-24 115.5 206 38.8
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.3e-24 114.8 241 39.0
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 8.3e-24 114.8 238 39.1
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-23 113.6 216 39.4
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.8e-23 113.6 235 35.3
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 2.4e-23 113.2 238 37.8
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 5.4e-23 112.1 117 56.4
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 1.2e-22 110.9 232 40.1
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 2.0e-22 110.2 123 52.0
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 3.5e-22 109.4 199 40.2
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 3.5e-22 109.4 255 35.7
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 3.5e-22 109.4 242 38.0
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.6e-22 109.0 244 36.1
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 5.9e-22 108.6 230 37.0
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 7.8e-22 108.2 237 37.1
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.3e-21 106.7 94 59.6
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 3.0e-21 106.3 200 40.0
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 6.6e-21 105.1 138 45.7
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.1e-20 104.4 238 37.4
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 1.5e-20 104.0 233 33.5
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.5e-20 104.0 239 36.0
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-20 103.6 180 42.2
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 7.3e-20 101.7 242 35.1
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 2.8e-19 99.8 240 35.0
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.7e-19 99.0 98 58.2
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 4.7e-19 99.0 100 53.0
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.0e-18 97.8 251 37.5
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.4e-18 97.4 234 37.2
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.0e-18 95.9 191 39.3
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 6.8e-18 95.1 236 36.9
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 8.9e-18 94.7 235 35.7
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 2.0e-17 93.6 137 41.6
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.4e-17 92.8 106 50.9
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 4.4e-17 92.4 238 35.3
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 7.5e-17 91.7 232 36.2
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 7.5e-17 91.7 235 38.7
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 7.5e-17 91.7 205 38.5
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 6.4e-16 88.6 235 34.0
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.2e-14 84.3 238 35.7
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 2.7e-14 83.2 226 32.7
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.3e-13 80.1 234 31.6
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 2.3e-13 80.1 195 34.4
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 8.6e-13 78.2 115 43.5
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 8.6e-13 78.2 223 30.0
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 1.9e-12 77.0 213 31.0
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 8.1e-11 71.6 60 60.0
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 8.1e-11 71.6 203 29.6
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.1e-10 71.2 78 48.7
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.8e-10 68.6 212 29.2
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 8.9e-10 68.2 154 35.1
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.2e-09 67.8 211 33.2
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 7.5e-09 65.1 169 35.5
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 2.9e-08 63.2 178 36.0
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 3.7e-08 62.8 148 37.2
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 3.7e-08 62.8 98 40.8
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.4e-07 60.8 38 78.9
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.4e-07 60.8 38 78.9


User provided reference genes

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