Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI53217 Sapria himalayana HOM05D000762 ORTHO05D006179 5.1e-84 314.3 151 100.0
SHI53758 Sapria himalayana HOM05D000762 ORTHO05D006179 5.1e-84 314.3 151 100.0
SHI53852 Sapria himalayana HOM05D000762 ORTHO05D006179 5.1e-84 314.3 151 100.0
SHI54089 Sapria himalayana HOM05D000762 ORTHO05D006179 5.1e-84 314.3 151 100.0
SHI33824 Sapria himalayana HOM05D000762 ORTHO05D006179 3.4e-56 221.9 191 62.8
SHI47635 Sapria himalayana HOM05D000762 ORTHO05D006179 2.4e-33 146.0 127 63.8
SHI48355 Sapria himalayana HOM05D000762 ORTHO05D006179 2.4e-33 146.0 127 63.8
BraA08t33051Z Brassica rapa HOM05D000762 ORTHO05D006179 4.5e-32 141.7 149 50.3
A08p10520 Brassica napus HOM05D007105 ORTHO05D006179 2.2e-31 139.4 142 51.4
BcaC07g37754 Brassica carinata HOM05D000762 ORTHO05D006179 6.5e-31 137.9 136 51.5
BolC8t48139H Brassica oleracea HOM05D000762 ORTHO05D006179 6.5e-31 137.9 136 51.5
Atru.chr6.2127 Acer truncatum HOM05D000762 ORTHO05D006179 1.2e-29 133.7 149 47.7
SHI33058 Sapria himalayana HOM05D000762 ORTHO05D006179 1.2e-29 133.7 147 54.4
BcaB04g18149 Brassica carinata HOM05D000762 ORTHO05D006179 1.6e-29 133.3 150 46.7
AL1G49550 Arabidopsis lyrata HOM05D000762 ORTHO05D006179 2.7e-29 132.5 135 50.4
MBI04_g30784_MAGBIO Magnolia biondii HOM05D000762 ORTHO05D006179 2.7e-29 132.5 160 48.1
Sed0017777 Sechium edule HOM05D000762 ORTHO05D006179 2.7e-29 132.5 154 45.5
Manes.15G190150 Manihot esculenta HOM05D000762 ORTHO05D006179 4.6e-29 131.7 152 49.3
Aa31LG2G14450 Aethionema arabicum HOM05D000762 ORTHO05D006179 6.1e-29 131.3 166 45.2
Ciclev10001424m.g Citrus clementina HOM05D000762 ORTHO05D006179 7.9e-29 131.0 159 46.5
Carub.0001s2992 Capsella rubella HOM05D000762 ORTHO05D006179 1.0e-28 130.6 135 50.4
ClCG11G016210 Citrullus lanatus HOM05D007105 ORTHO05D009304 1.0e-28 130.6 154 45.5
Os05g0389500 Oryza sativa ssp. japonica HOM05D000762 ORTHO05D006179 1.4e-28 130.2 157 43.3
MELO3C010539.2 Cucumis melo HOM05D000762 ORTHO05D006179 1.8e-28 129.8 136 50.0
Thhalv10007841m.g Eutrema salsugineum HOM05D000762 ORTHO05D006179 1.8e-28 129.8 135 49.6
Sp1g27300 Schrenkiella parvula HOM05D000762 ORTHO05D006179 2.3e-28 129.4 135 49.6
Aqoxy3G01997 Aquilegia oxysepala HOM05D000762 ORTHO05D006179 3.0e-28 129.0 157 45.2
BcaB07g32811 Brassica carinata HOM05D000762 ORTHO05D006179 3.0e-28 129.0 136 50.0
AUR62027292 Chenopodium quinoa HOM05D000762 ORTHO05D006179 3.0e-28 129.0 152 47.4
CsaV3_4G037910 Cucumis sativus L. HOM05D000762 ORTHO05D006179 3.0e-28 129.0 155 44.5
QL12p002432 Quercus lobata HOM05D000762 ORTHO05D006179 3.0e-28 129.0 144 49.3
TWI32G0449 Tripterygium wilfordii HOM05D000762 ORTHO05D006179 3.0e-28 129.0 144 49.3
BcaC05g27179 Brassica carinata HOM05D000762 ORTHO05D006179 3.9e-28 128.6 158 44.9
Sabra03G0072900 Salix brachista HOM05D000762 ORTHO05D006179 3.9e-28 128.6 153 48.4
CSS0047392 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D006179 5.1e-28 128.3 162 46.3
Duzib114G0367 Durio zibethinus HOM05D000762 ORTHO05D006179 5.1e-28 128.3 152 48.7
Thecc.03G322500 Theobroma cacao HOM05D000762 ORTHO05D006179 6.7e-28 127.9 135 49.6
A09p34690 Brassica napus HOM05D000762 ORTHO05D006179 1.1e-27 127.1 135 48.1
C05p30750 Brassica napus HOM05D000762 ORTHO05D006179 1.1e-27 127.1 136 49.3
BolC5t31807H Brassica oleracea HOM05D000762 ORTHO05D006179 1.1e-27 127.1 136 49.3
CSS0006761 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D006179 1.1e-27 127.1 149 47.7
Gohir.A12G200600 Gossypium hirsutum HOM05D000762 ORTHO05D006179 1.1e-27 127.1 146 47.3
COL.COLO4_16726 Corchorus olitorius HOM05D000762 ORTHO05D006179 2.6e-27 125.9 153 45.8
Duzib068G0194 Durio zibethinus HOM05D000762 ORTHO05D006179 2.6e-27 125.9 158 44.3
Actinidia30332 Actinidia chinensis HOM05D000762 ORTHO05D006179 3.3e-27 125.6 144 47.2
Eucgr.D02578 Eucalyptus grandis HOM05D000762 ORTHO05D006179 3.3e-27 125.6 156 44.9
Gohir.D12G203400 Gossypium hirsutum HOM05D000762 ORTHO05D006179 4.4e-27 125.2 145 46.2
Gorai.008G218200 Gossypium raimondii HOM05D000762 ORTHO05D006179 4.4e-27 125.2 145 46.2
THA.LOC104814382 Tarenaya hassleriana HOM05D000762 ORTHO05D006179 4.4e-27 125.2 155 44.5
FAN13G3000 Fragaria x ananassa HOM05D000762 ORTHO05D006179 5.7e-27 124.8 153 47.1
CiPaw.11G076700 Carya illinoinensis HOM05D000762 ORTHO05D006179 7.4e-27 124.4 136 47.8
Prupe.5G016000 Prunus persica HOM05D000762 ORTHO05D006179 7.4e-27 124.4 141 50.4
FvH4_5g24460 Fragaria vesca HOM05D000762 ORTHO05D006179 9.7e-27 124.0 153 47.1
FAN08G1370 Fragaria x ananassa HOM05D000762 ORTHO05D006179 9.7e-27 124.0 152 46.1
TPR.G30313 Trifolium pratense HOM05D000762 ORTHO05D006179 9.7e-27 124.0 158 45.6
Glyma.09G216700 Glycine max HOM05D000762 ORTHO05D006179 1.3e-26 123.6 149 47.0
SalBow4G2613 Salvia bowleyana HOM05D000762 ORTHO05D006179 1.3e-26 123.6 144 47.9
MSTRG.11843 Avicennia marina HOM05D000762 ORTHO05D006179 1.7e-26 123.2 134 47.8
ECA233G0984 Erigeron canadensis HOM05D000762 ORTHO05D006179 1.7e-26 123.2 148 47.3
arahy.Tifrunner.gnm1.ann1.GB6XSM Arachis hypogaea HOM05D000762 ORTHO05D006179 2.2e-26 122.9 135 50.4
arahy.Tifrunner.gnm1.ann1.RB8GEU Arachis hypogaea HOM05D000762 ORTHO05D006179 2.2e-26 122.9 135 50.4
Lj2g0003478 Lotus japonicus HOM05D000762 ORTHO05D006179 2.2e-26 122.9 136 50.0
vmacro00115 Vaccinium macrocarpon HOM05D000762 ORTHO05D006179 2.2e-26 122.9 153 47.1
Lalb_Chr16g0380531 Lupinus albus HOM05D000762 ORTHO05D006179 2.8e-26 122.5 136 49.3
FAN13G2277 Fragaria x ananassa HOM05D000762 ORTHO05D006179 3.7e-26 122.1 153 46.4
FAN18G3726 Fragaria x ananassa HOM05D000762 ORTHO05D006179 3.7e-26 122.1 153 46.4
Sc07g0008180 Simmondsia chinensis HOM05D000762 ORTHO05D006179 3.7e-26 122.1 152 45.4
GSVIVG01036916001 Vitis vinifera HOM05D000762 ORTHO05D006179 3.7e-26 122.1 134 48.5
RcHm_v2.0_Chr7g0214871 Rosa chinensis HOM05D000762 ORTHO05D006179 4.8e-26 121.7 153 47.1
DCAR_030950 Daucus carota HOM05D000762 ORTHO05D006179 6.3e-26 121.3 159 42.8
Dinv09425 Davidia involucrata HOM05D000762 ORTHO05D006179 6.3e-26 121.3 136 49.3
Migut.A00494 Erythranthe guttata HOM05D000762 ORTHO05D006179 6.3e-26 121.3 135 48.9
Potri.003G106000 Populus trichocarpa HOM05D000762 ORTHO05D006179 6.3e-26 121.3 153 46.4
VMungo1215G2102 Vigna mungo HOM05D000762 ORTHO05D006179 6.3e-26 121.3 150 46.7
AUR62007444 Chenopodium quinoa HOM05D000762 ORTHO05D006179 1.1e-25 120.6 175 41.7
Haze_08030 Corylus avellana HOM05D000762 ORTHO05D006179 1.8e-25 119.8 145 46.2
MD16G1287200 Malus domestica HOM05D000762 ORTHO05D006179 1.8e-25 119.8 153 46.4
PGR031G0157 Punica granatum HOM05D000762 ORTHO05D006179 1.8e-25 119.8 136 50.0
TAR374G0039 Trochodendron aralioides HOM05D000762 ORTHO05D006179 1.8e-25 119.8 136 50.0
EL10Ac5g11870 Beta vulgaris HOM05D000762 ORTHO05D006179 2.4e-25 119.4 135 47.4
FAN04G2135 Fragaria x ananassa HOM05D000762 ORTHO05D006179 2.4e-25 119.4 153 45.8
Lsat_1_v5_gn_8_24940 Lactuca sativa HOM05D000762 ORTHO05D006179 2.4e-25 119.4 132 47.0
HPP92_022767 Vanilla planifolia HOM05D000762 ORTHO05D006179 3.1e-25 119.0 138 42.8
TPR.G30319 Trifolium pratense HOM05D000762 ORTHO05D006179 4.1e-25 118.6 158 43.7
Nn1g09246 Nelumbo nucifera HOM05D000762 ORTHO05D006179 5.3e-25 118.2 159 46.5
HanXRQChr07g0204501 Helianthus annuus HOM05D000762 ORTHO05D006179 1.2e-24 117.1 145 44.1
SGA_v2.0_scaffold27G11724 Striga asiatica HOM05D000762 ORTHO05D006179 1.2e-24 117.1 133 49.6
Nitab4.5_0001132g0020 Nicotiana tabacum HOM05D000762 ORTHO05D006179 2.0e-24 116.3 137 46.0
Phvul.002G124000 Phaseolus vulgaris HOM05D000762 ORTHO05D006179 2.0e-24 116.3 150 46.7
Solyc08g075010.4 Solanum lycopersicum HOM05D000762 ORTHO05D006179 2.0e-24 116.3 136 47.1
Ca_25069_v3 Cicer arietinum L. HOM05D000762 ORTHO05D006179 3.4e-24 115.5 137 48.2
Cc08_g04650 Coffea canephora HOM05D000762 ORTHO05D006179 3.4e-24 115.5 145 46.9
Medtr5g026280 Medicago truncatula HOM05D000762 ORTHO05D006179 3.4e-24 115.5 137 47.4
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 3.4e-24 115.5 153 43.8
Psat2g144120 Pisum sativum HOM05D000762 ORTHO05D006179 7.7e-24 114.4 160 44.4
Sopen08g023620 Solanum pennellii HOM05D000762 ORTHO05D006179 1.0e-23 114.0 136 46.3
Nitab4.5_0002799g0030 Nicotiana tabacum HOM05D000762 ORTHO05D006179 1.3e-23 113.6 127 48.8
CANSAT11G0376 Cannabis sativa HOM05D000762 ORTHO05D006179 1.7e-23 113.2 156 42.9
PGSC0003DMG401015717 Solanum tuberosum HOM05D000762 ORTHO05D006179 1.7e-23 113.2 136 46.3
Peaxi162Scf00157g01314 Petunia axillaris HOM05D000762 ORTHO05D006179 2.2e-23 112.8 155 46.5
CDE11G1126 Ceratophyllum demersum HOM05D000762 ORTHO05D006179 3.8e-23 112.1 133 46.6
PSO063G1071 Papaver somniferum HOM05D000762 ORTHO05D006179 3.8e-23 112.1 154 42.2
AT1G31500 Arabidopsis thaliana HOM05D000762 ORTHO05D006179 6.5e-23 111.3 102 53.9
Hund11080 Selenicereus undatus HOM05D000762 ORTHO05D006179 1.1e-22 110.5 123 47.2
Hma1.2p1_0262F.1_g105200 Hydrangea macrophylla HOM05D000762 ORTHO05D006179 1.4e-22 110.2 135 46.7
Hma1.2p1_0262F.1_g105210 Hydrangea macrophylla HOM05D000762 ORTHO05D006179 1.4e-22 110.2 135 46.7
SMO347G0652 Selaginella moellendorffii HOM05D000762 ORTHO05D006179 2.1e-21 106.3 155 38.1
ATR0568G206 Amborella trichopoda HOM05D000762 ORTHO05D006179 7.9e-21 104.4 138 43.5
Atru.BG.144.p Acer truncatum HOM05D000762 ORTHO05D006179 1.0e-20 104.0 148 41.9
Rhsim11G0040700 Rhododendron simsii HOM05D000762 ORTHO05D006179 3.9e-20 102.1 107 49.5
SMO167G0012 Selaginella moellendorffii HOM05D000762 ORTHO05D006179 5.2e-20 101.7 153 36.6
AagrBONN_evm.TU.Sc2ySwM_344.1125 Anthoceros agrestis HOM05D000762 ORTHO05D006179 1.5e-19 100.1 151 39.7
Lj8A371G20 Lonicera japonica HOM05D000762 ORTHO05D006179 2.0e-19 99.8 109 47.7
CARHR287020 Cardamine hirsuta HOM05D000762 ORTHO05D006179 1.8e-17 93.2 100 49.0
Glyma.01G151466 Glycine max HOM05D000762 ORTHO05D006179 1.0e-15 87.4 102 49.0
CsaV3_5G019990 Cucumis sativus L. HOM05D000762 ORTHO05D006179 8.5e-15 84.3 74 52.7
Ca_18033_v3 Cicer arietinum L. HOM05D000762 ORTHO05D006179 1.1e-14 84.0 100 50.0
AL1G49510 Arabidopsis lyrata HOM05D000762 ORTHO05D006179 2.5e-14 82.8 144 35.4
CsaV3_UNG224740 Cucumis sativus L. HOM05D000762 ORTHO05D006179 3.2e-14 82.4 67 56.7
Pp3c22_8300 Physcomitrium patens HOM05D000762 ORTHO05D006179 3.2e-14 82.4 101 39.6
Mapoly0010s0066 Marchantia polymorpha HOM05D000762 ORTHO05D006179 8.0e-13 77.8 92 43.5
SHI48647 Sapria himalayana HOM05D000762 ORTHO05D364233 1.7e-10 70.1 61 60.7
SHI32997 Sapria himalayana HOM05D000762 ORTHO05D006179 4.8e-10 68.6 67 59.7
CBR_g57848 Chara braunii HOM05D000762 ORTHO05D006179 8.2e-10 67.8 94 39.4
AT1G31530 Arabidopsis thaliana HOM05D000762 ORTHO05D006179 1.1e-09 67.4 138 35.5
Cpa.g.sc24.94 Carica papaya HOM05D000762 ORTHO05D006179 3.5e-08 62.4 51 58.8
ECA233G2303 Erigeron canadensis HOM05D000762 ORTHO05D006179 3.8e-07 58.9 78 44.9
MELO3C017294.2 Cucumis melo HOM05D000762 ORTHO05D002234 4.2e-06 55.5 98 37.8
MCO05G456 Micromonas commoda HOM05D000762 ORTHO05D006179 5.5e-06 55.1 83 38.6
CsaV3_1G003690 Cucumis sativus L. HOM05D000762 ORTHO05D002234 7.2e-06 54.7 98 36.7


User provided reference genes

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