Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI53683 Sapria himalayana HOM05D002753 ORTHO05D003097 9.5e-50 199.9 103 100.0
Ciclev10029816m.g Citrus clementina HOM05D002753 ORTHO05D003097 6.0e-20 100.9 74 67.6
Dinv08972 Davidia involucrata HOM05D002753 ORTHO05D003097 2.3e-19 99.0 70 70.0
GSVIVG01038511001 Vitis vinifera HOM05D002753 ORTHO05D003097 2.3e-19 99.0 75 68.0
CSS0000609 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 3.0e-19 98.6 70 71.4
CSS0037026 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 3.0e-19 98.6 70 71.4
Medtr1g053780 Medicago truncatula HOM05D002753 ORTHO05D003097 3.9e-19 98.2 73 65.8
Medtr4g092970 Medicago truncatula HOM05D002753 ORTHO05D003097 3.9e-19 98.2 73 65.8
Manes.10G093500 Manihot esculenta HOM05D002753 ORTHO05D003097 5.1e-19 97.8 75 68.0
QL11p026419 Quercus lobata HOM05D002753 ORTHO05D003097 5.1e-19 97.8 74 67.6
Lj4g0007428 Lotus japonicus HOM05D002753 ORTHO05D003097 6.6e-19 97.4 75 65.3
Lj4g0024024 Lotus japonicus HOM05D002753 ORTHO05D003097 6.6e-19 97.4 75 65.3
LjContig00139g0003532 Lotus japonicus HOM05D002753 ORTHO05D003097 6.6e-19 97.4 75 65.3
LjContig00139g0010456 Lotus japonicus HOM05D002753 ORTHO05D003097 6.6e-19 97.4 75 65.3
LjContig00139g0015911 Lotus japonicus HOM05D002753 ORTHO05D003097 6.6e-19 97.4 75 65.3
Sed0024829 Sechium edule HOM05D002753 ORTHO05D003097 6.6e-19 97.4 75 66.7
Lj5A226G56 Lonicera japonica HOM05D002753 ORTHO05D003097 8.7e-19 97.1 75 68.0
Lalb_Chr16g0383061 Lupinus albus HOM05D002753 ORTHO05D003097 1.5e-18 96.3 74 63.5
Nn2g15300 Nelumbo nucifera HOM05D002753 ORTHO05D003097 1.5e-18 96.3 70 68.6
Rhsim05G0096700 Rhododendron simsii HOM05D002753 ORTHO05D003097 1.5e-18 96.3 70 67.1
Sc08g0004090 Simmondsia chinensis HOM05D002753 ORTHO05D003097 1.5e-18 96.3 70 67.1
TAR376G1183 Trochodendron aralioides HOM05D002753 ORTHO05D003097 1.5e-18 96.3 75 65.3
Duzib132G0158 Durio zibethinus HOM05D002753 ORTHO05D003097 1.9e-18 95.9 70 68.6
Thecc.02G125700 Theobroma cacao HOM05D002753 ORTHO05D003097 1.9e-18 95.9 70 68.6
TWI23G0822 Tripterygium wilfordii HOM05D002753 ORTHO05D003097 1.9e-18 95.9 70 65.7
ClCG09G016500 Citrullus lanatus HOM05D002753 ORTHO05D003097 3.3e-18 95.1 68 67.6
Phvul.002G215600 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 3.3e-18 95.1 75 62.7
Sabra16G0177700 Salix brachista HOM05D002753 ORTHO05D003097 3.3e-18 95.1 75 66.7
CSS0028145 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 4.3e-18 94.7 70 68.6
Ca_18410_v3 Cicer arietinum L. HOM05D002753 ORTHO05D003097 4.3e-18 94.7 73 63.0
Rhsim05G0097100 Rhododendron simsii HOM05D002753 ORTHO05D003097 4.3e-18 94.7 82 59.8
vmacro19599 Vaccinium macrocarpon HOM05D002753 ORTHO05D003097 4.3e-18 94.7 69 68.1
Glyma.08G065200 Glycine max HOM05D002753 ORTHO05D003097 5.6e-18 94.4 70 64.3
Psat7g103160 Pisum sativum HOM05D002753 ORTHO05D003097 5.6e-18 94.4 71 64.8
CAN.G504.39 Capsicum annuum HOM05D002753 ORTHO05D003097 7.3e-18 94.0 75 64.0
SalBow6G5254 Salvia bowleyana HOM05D002753 ORTHO05D003097 7.3e-18 94.0 70 65.7
SGA_v2.0_scaffold32G12940 Striga asiatica HOM05D002753 ORTHO05D003097 7.3e-18 94.0 74 63.5
Migut.B00526 Erythranthe guttata HOM05D002753 ORTHO05D003097 9.6e-18 93.6 74 62.2
Nitab4.5_0000935g0210 Nicotiana tabacum HOM05D002753 ORTHO05D003097 9.6e-18 93.6 75 64.0
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 1.3e-17 93.2 70 65.7
Nitab4.5_0005163g0040 Nicotiana tabacum HOM05D002753 ORTHO05D003097 1.3e-17 93.2 70 65.7
Potri.001G285000 Populus trichocarpa HOM05D002753 ORTHO05D003097 1.3e-17 93.2 75 65.3
Prupe.8G074100 Prunus persica HOM05D002753 ORTHO05D003097 1.3e-17 93.2 73 61.6
AUR62027087 Chenopodium quinoa HOM05D002753 ORTHO05D003097 2.1e-17 92.4 74 62.2
AUR62030927 Chenopodium quinoa HOM05D002753 ORTHO05D003097 2.1e-17 92.4 74 62.2
RcHm_v2.0_Chr2g0118161 Rosa chinensis HOM05D002753 ORTHO05D003097 2.1e-17 92.4 73 63.0
MD10G1056400 Malus domestica HOM05D002753 ORTHO05D003097 3.6e-17 91.7 70 64.3
FvH4_1g23320 Fragaria vesca HOM05D002753 ORTHO05D003097 4.8e-17 91.3 73 61.6
FAN19G2857 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.8e-17 91.3 73 61.6
FAN23G1321 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.8e-17 91.3 70 64.3
FAN26G3199 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.8e-17 91.3 73 61.6
FAN28G0139 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.8e-17 91.3 73 61.6
VMungo0251G0167 Vigna mungo HOM05D002753 ORTHO05D003097 4.8e-17 91.3 75 58.7
MELO3C018558.2 Cucumis melo HOM05D002753 ORTHO05D003097 6.2e-17 90.9 68 64.7
Eucgr.I02590 Eucalyptus grandis HOM05D002753 ORTHO05D003097 8.1e-17 90.5 70 65.7
PSO339G2269 Papaver somniferum HOM05D002753 ORTHO05D003097 8.1e-17 90.5 70 60.0
PSO339G4496 Papaver somniferum HOM05D002753 ORTHO05D003097 8.1e-17 90.5 70 60.0
Sopen01g048580 Solanum pennellii HOM05D002753 ORTHO05D003097 8.1e-17 90.5 75 62.7
MBI16_g10443_MAGBIO Magnolia biondii HOM05D002753 ORTHO05D003097 1.1e-16 90.1 70 62.9
TPR.G39308 Trifolium pratense HOM05D002753 ORTHO05D003097 1.1e-16 90.1 67 65.7
Atru.chr6.1395 Acer truncatum HOM05D002753 ORTHO05D003097 1.4e-16 89.7 75 61.3
Aa31LG3G17470 Aethionema arabicum HOM05D002753 ORTHO05D003097 1.4e-16 89.7 71 62.0
Aqoxy6G00650 Aquilegia oxysepala HOM05D002753 ORTHO05D003097 1.4e-16 89.7 70 62.9
MSTRG.16630 Avicennia marina HOM05D002753 ORTHO05D003097 1.4e-16 89.7 70 62.9
CsaV3_7G007440 Cucumis sativus L. HOM05D002753 ORTHO05D003097 1.4e-16 89.7 68 64.7
RcHm_v2.0_Chr2g0118131 Rosa chinensis HOM05D002753 ORTHO05D003097 1.4e-16 89.7 73 61.6
Hund00392 Selenicereus undatus HOM05D002753 ORTHO05D003097 1.4e-16 89.7 74 59.5
DCAR_001841 Daucus carota HOM05D002753 ORTHO05D003097 1.8e-16 89.4 75 61.3
Sp6g33790 Schrenkiella parvula HOM05D002753 ORTHO05D003097 1.8e-16 89.4 70 62.9
Atru.chr6.1339 Acer truncatum HOM05D002753 ORTHO05D003097 2.4e-16 89.0 68 63.2
BcaC03g13263 Brassica carinata HOM05D002753 ORTHO05D003097 2.4e-16 89.0 75 58.7
C02p03930 Brassica napus HOM05D002753 ORTHO05D003097 2.4e-16 89.0 75 58.7
BolC2t06356H Brassica oleracea HOM05D002753 ORTHO05D003097 2.4e-16 89.0 75 58.7
BraA02t04986Z Brassica rapa HOM05D002753 ORTHO05D003097 3.1e-16 88.6 75 58.7
PGR142G3779 Punica granatum HOM05D002753 ORTHO05D003097 3.1e-16 88.6 70 62.9
Solyc01g106190.4 Solanum lycopersicum HOM05D002753 ORTHO05D003097 3.1e-16 88.6 75 61.3
Ah.01g024130 Amaranthus hybridus HOM05D002753 ORTHO05D003097 4.0e-16 88.2 74 58.1
EL10Ac9g22119 Beta vulgaris HOM05D002753 ORTHO05D003097 4.0e-16 88.2 74 59.5
PSO801G0587 Papaver somniferum HOM05D002753 ORTHO05D003097 4.0e-16 88.2 70 58.6
Cc02_g20650 Coffea canephora HOM05D002753 ORTHO05D003097 9.0e-16 87.0 75 62.7
AL6G19990 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 1.2e-15 86.7 71 59.2
BcaB05g21545 Brassica carinata HOM05D002753 ORTHO05D003097 1.5e-15 86.3 70 61.4
CSS0023717 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 1.5e-15 86.3 70 62.9
PGR142G0966 Punica granatum HOM05D002753 ORTHO05D003097 2.0e-15 85.9 70 61.4
Carub.0003s2766 Capsella rubella HOM05D002753 ORTHO05D003097 2.6e-15 85.5 71 60.6
AT5G09580 Arabidopsis thaliana HOM05D002753 ORTHO05D003097 4.4e-15 84.7 70 60.0
A02p00030 Brassica napus HOM05D002753 ORTHO05D003097 1.7e-14 82.8 75 56.0
ECA234G0873 Erigeron canadensis HOM05D002753 ORTHO05D003097 1.7e-14 82.8 74 56.8
Thhalv10013860m.g Eutrema salsugineum HOM05D002753 ORTHO05D003097 1.7e-14 82.8 75 56.0
Gohir.A13G049800 Gossypium hirsutum HOM05D002753 ORTHO05D003097 1.7e-14 82.8 72 62.5
Gorai.013G053900 Gossypium raimondii HOM05D002753 ORTHO05D003097 2.9e-14 82.0 72 62.5
GSVIVG01007853001 Vitis vinifera HOM05D002753 ORTHO05D003097 2.9e-14 82.0 75 56.0
Gohir.D13G048300 Gossypium hirsutum HOM05D002753 ORTHO05D003097 3.8e-14 81.6 72 62.5
HanXRQChr10g0291201 Helianthus annuus HOM05D002753 ORTHO05D003097 1.4e-13 79.7 70 61.4
Os11g0167200 Oryza sativa ssp. japonica HOM05D002753 ORTHO05D003097 1.9e-13 79.3 70 52.9
Lsat_1_v5_gn_5_111001 Lactuca sativa HOM05D002753 ORTHO05D003097 7.1e-13 77.4 67 58.2
Zm00001eb108150 Zea mays HOM05D002753 ORTHO05D003097 7.1e-13 77.4 70 52.9
Zm00001eb166050 Zea mays HOM05D002753 ORTHO05D003097 7.1e-13 77.4 70 52.9
Zm00001eb202470 Zea mays HOM05D002753 ORTHO05D003097 7.1e-13 77.4 70 52.9
Zm00001eb248430 Zea mays HOM05D002753 ORTHO05D003097 7.1e-13 77.4 70 52.9
Zm00001eb292560 Zea mays HOM05D002753 ORTHO05D003097 7.1e-13 77.4 70 52.9
Zm00001eb250270 Zea mays HOM05D002753 ORTHO05D003097 9.3e-13 77.0 70 52.9
unitig_0.g790 Utricularia gibba HOM05D002753 ORTHO05D003097 1.2e-12 76.6 68 54.4
TPR.G25705 Trifolium pratense HOM05D002753 ORTHO05D003467 2.7e-12 75.5 72 52.8
TPR.G20923 Trifolium pratense HOM05D002753 ORTHO05D003097 3.5e-12 75.1 67 55.2
CANSAT54G2703 Cannabis sativa HOM05D002753 ORTHO05D003097 2.3e-11 72.4 71 52.1
CSS0003377 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 8.1e-09 63.9 53 64.2
SEGI_35693 Sequoiadendron giganteum HOM05D002753 ORTHO05D003097 1.8e-08 62.8 68 44.1
Lj5A226G57 Lonicera japonica HOM05D002753 ORTHO05D003097 6.9e-08 60.8 32 81.2
CSS0006440 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 9.0e-08 60.5 32 84.4
CiPaw.05G027300 Carya illinoinensis HOM05D002753 ORTHO05D003097 4.5e-07 58.2 32 81.2
Glyma.07G184100 Glycine max HOM05D002753 ORTHO05D003097 4.5e-07 58.2 32 75.0
Rhsim05G0097300 Rhododendron simsii HOM05D002753 ORTHO05D003097 4.5e-07 58.2 34 73.5
Actinidia28019 Actinidia chinensis HOM05D002753 ORTHO05D003097 5.8e-07 57.8 62 50.0
Cpa.g.sc1376.1 Carica papaya HOM05D002753 ORTHO05D003097 9.9e-07 57.0 40 70.0
Peaxi162Scf00016g03459 Petunia axillaris HOM05D002753 ORTHO05D003097 1.7e-06 56.2 32 75.0
PGSC0003DMG400010678 Solanum tuberosum HOM05D002753 ORTHO05D003097 3.8e-06 55.1 37 70.3
CARHR203810 Cardamine hirsuta HOM05D002753 ORTHO05D003097 8.4e-06 53.9 32 71.9


User provided reference genes

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