Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 7.2e-92 340.5 166 100.0
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 4.4e-89 331.3 165 97.6
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 4.4e-89 331.3 165 97.6
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-88 329.7 166 95.8
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 3.9e-85 318.2 166 94.0
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 1.2e-65 253.4 148 84.5
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.7e-56 223.0 140 80.0
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 9.6e-52 207.2 111 94.6
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 5.8e-49 198.0 154 68.8
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 2.2e-48 196.1 111 90.1
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 3.8e-48 195.3 111 86.5
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 6.0e-46 188.0 111 87.4
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 1.6e-43 179.9 105 87.6
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 1.6e-35 153.3 95 85.3
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 6.2e-35 151.4 148 55.4
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.1e-35 151.0 148 54.7
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.1e-34 150.6 149 57.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 5.3e-34 148.3 148 54.1
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 3.8e-32 142.1 95 77.9
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.9e-31 139.8 72 90.3
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-28 129.8 146 52.7
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 3.3e-28 129.0 74 83.8
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 5.7e-28 128.3 142 52.1
Nn2g15526 Nelumbo nucifera HOM05D009845 ORTHO05D006814 4.5e-25 118.6 66 89.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 5.8e-25 118.2 73 76.7
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.7e-24 116.7 59 88.1
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.7e-24 116.7 59 88.1
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.1e-23 114.0 57 89.5
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 1.2e-22 110.5 76 72.4
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 7.9e-22 107.8 125 48.8
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.3e-21 106.3 56 94.6
RcHm_v2.0_Chr6g0257981 Rosa chinensis HOM05D022571 ORTHO05D010624 3.0e-21 105.9 84 66.7
Nitab4.5_0000062g0140 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-20 103.6 58 86.2
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 2.4e-18 96.3 93 53.8
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 4.1e-18 95.5 93 54.8
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 6.9e-18 94.7 93 53.8
TPR.G11219 Trifolium pratense HOM05D009845 ORTHO05D010624 6.9e-18 94.7 93 52.7
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 6.9e-18 94.7 92 54.3
arahy.Tifrunner.gnm1.ann1.3S39J7 Arachis hypogaea HOM05D009845 ORTHO05D010624 2.9e-16 89.4 93 50.5
arahy.Tifrunner.gnm1.ann1.L3Y80W Arachis hypogaea HOM05D009845 ORTHO05D010624 2.9e-16 89.4 93 50.5
arahy.Tifrunner.gnm1.ann1.XL5EFA Arachis hypogaea HOM05D009845 ORTHO05D010624 2.9e-16 89.4 93 50.5
arahy.Tifrunner.gnm1.ann1.XS77WZ Arachis hypogaea HOM05D009845 ORTHO05D010624 2.9e-16 89.4 93 50.5
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 6.5e-16 88.2 59 72.9
arahy.Tifrunner.gnm1.ann1.W8CL8V Arachis hypogaea HOM05D009845 ORTHO05D010624 6.5e-16 88.2 93 49.5
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 8.5e-16 87.8 40 92.5
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 8.5e-16 87.8 40 92.5
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 8.5e-16 87.8 40 92.5
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 8.5e-16 87.8 40 92.5
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 1.1e-15 87.4 40 90.0
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.4e-15 87.0 40 90.0
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.4e-15 87.0 40 90.0
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.4e-15 87.0 40 90.0
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 4.2e-15 85.5 40 90.0
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 4.2e-15 85.5 40 90.0
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 4.2e-15 85.5 40 90.0
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 4.2e-15 85.5 40 90.0
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 4.2e-15 85.5 40 90.0
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 4.2e-15 85.5 40 90.0
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 4.2e-15 85.5 40 90.0
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 4.2e-15 85.5 40 90.0
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 4.2e-15 85.5 47 78.7
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 4.2e-15 85.5 40 90.0
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 5.5e-15 85.1 40 87.5
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 5.5e-15 85.1 40 87.5
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 5.5e-15 85.1 38 94.7
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 9.4e-15 84.3 38 92.1
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.2e-14 84.0 47 76.6
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.6e-14 83.6 39 89.7
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 1.6e-14 83.6 40 85.0
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 1.6e-14 83.6 40 85.0
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 2.7e-14 82.8 39 87.2
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 7.9e-14 81.3 38 86.8
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.9e-14 81.3 38 86.8
HanXRQChr01g0004171 Helianthus annuus HOM05D029082 ORTHO05D010624 1.0e-13 80.9 54 68.5
HanXRQChr16g0506281 Helianthus annuus HOM05D029082 ORTHO05D010624 1.4e-13 80.5 54 66.7
Lalb_Chr08g0236141 Lupinus albus HOM05D009845 ORTHO05D010624 1.8e-13 80.1 85 49.4
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 1.8e-13 80.1 85 49.4
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 1.8e-13 80.1 40 85.0
Lsat_1_v5_gn_1_129701 Lactuca sativa HOM05D009845 ORTHO05D010624 2.3e-13 79.7 53 66.0
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 2.3e-13 79.7 93 45.2
ECA248G2152 Erigeron canadensis HOM05D029082 ORTHO05D010624 3.0e-13 79.3 54 64.8
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 1.5e-12 77.0 93 45.2
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 1.5e-12 77.0 67 59.7
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 2.0e-12 76.6 93 41.9
VMungo1309G2800 Vigna mungo HOM05D009845 ORTHO05D010624 2.5e-12 76.3 93 45.2
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 3.3e-12 75.9 93 44.1
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-11 73.9 42 73.8
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.7e-11 73.6 50 78.0
HPP92_004941 Vanilla planifolia HOM05D023446 ORTHO05D025972 2.8e-11 72.8 90 45.6
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 3.7e-11 72.4 38 76.3
Carub.0004s2920 Capsella rubella HOM05D011069 ORTHO05D010624 4.1e-10 68.9 54 59.3
SHI33643 Sapria himalayana HOM05D005794 ORTHO05D010624 4.1e-10 68.9 35 82.9
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 5.3e-10 68.6 40 67.5
CARHR141830 Cardamine hirsuta HOM05D011069 ORTHO05D010624 6.9e-10 68.2 54 59.3
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 9.1e-10 67.8 32 87.5
Sp4g28540 Schrenkiella parvula HOM05D011069 ORTHO05D010624 9.1e-10 67.8 71 52.1
TWI39G0104 Tripterygium wilfordii HOM05D011069 ORTHO05D010624 9.1e-10 67.8 48 64.6
MELO3C000713.2 Cucumis melo HOM05D039398 ORTHO05D006814 1.2e-09 67.4 39 84.6
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.5e-09 67.0 31 90.3
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.5e-09 67.0 31 90.3
MELO3C027807.2 Cucumis melo HOM05D039398 ORTHO05D006814 1.5e-09 67.0 39 82.1
Thhalv10001774m.g Eutrema salsugineum HOM05D011069 ORTHO05D010624 5.9e-09 65.1 50 62.0
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.0e-08 64.3 30 90.0
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 1.3e-08 63.9 30 90.0
FvH4_2g07040 Fragaria vesca HOM05D022571 ORTHO05D029580 1.7e-08 63.5 62 50.0
FAN15G1463 Fragaria x ananassa HOM05D022571 ORTHO05D029580 1.7e-08 63.5 62 50.0
FAN27G0090 Fragaria x ananassa HOM05D022571 ORTHO05D029580 1.7e-08 63.5 62 50.0
DCAR_022854 Daucus carota HOM05D000144 ORTHO05D010624 8.5e-08 61.2 44 68.2
FAN24G3155 Fragaria x ananassa HOM05D022571 ORTHO05D029580 8.5e-08 61.2 62 48.4
AL4G45920 Arabidopsis lyrata HOM05D011069 ORTHO05D010624 1.1e-07 60.8 55 50.9
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.4e-07 60.5 30 86.7
AT2G46505 Arabidopsis thaliana HOM05D011069 ORTHO05D010624 2.5e-07 59.7 55 50.9
Ah.01g013130 Amaranthus hybridus HOM05D007797 ORTHO05D009741 4.2e-07 58.9 59 49.2
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 4.2e-07 58.9 41 73.2
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 5.5e-07 58.5 44 63.6
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 9.4e-07 57.8 30 80.0
Aa31sc13G60 Aethionema arabicum HOM05D011069 ORTHO05D010624 1.2e-06 57.4 51 56.9
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.6e-06 57.0 39 59.0
BcaNung05601 Brassica carinata HOM05D011069 ORTHO05D010624 2.1e-06 56.6 54 48.1
Zm00001eb351000 Zea mays HOM05D023446 ORTHO05D025972 3.6e-06 55.8 90 34.4
BcaC01g05061 Brassica carinata HOM05D011069 ORTHO05D010624 4.7e-06 55.5 54 46.3
C03p30640 Brassica napus HOM05D011069 ORTHO05D010624 4.7e-06 55.5 54 46.3
BolC3t15414H Brassica oleracea HOM05D011069 ORTHO05D010624 4.7e-06 55.5 54 46.3
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 4.7e-06 55.5 32 75.0
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 6.1e-06 55.1 31 77.4
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 6.1e-06 55.1 33 72.7
Os01g0935900 Oryza sativa ssp. japonica HOM05D023446 ORTHO05D025972 6.1e-06 55.1 81 35.8
BcaB01g03211 Brassica carinata HOM05D011069 ORTHO05D010624 7.9e-06 54.7 54 44.4


User provided reference genes

Program Settings