Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 5.9e-94 347.8 216 100.0
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 7.1e-39 164.9 134 68.7
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 9.6e-28 127.9 193 53.4
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-21 107.8 90 82.2
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 3.3e-20 102.8 65 83.1
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 2.8e-19 99.8 212 35.8
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 8.1e-19 98.2 217 36.4
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 8.1e-19 98.2 209 38.8
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 1.4e-18 97.4 200 39.5
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 1.4e-18 97.4 208 36.5
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 1.5e-17 94.0 204 36.3
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 2.0e-17 93.6 204 37.7
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 2.0e-17 93.6 204 37.7
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 7.6e-17 91.7 205 37.1
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.7e-16 90.5 239 33.9
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 1.7e-16 90.5 196 39.8
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 2.2e-16 90.1 204 37.7
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.2e-16 90.1 201 35.3
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 2.9e-16 89.7 204 35.8
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 3.8e-16 89.4 202 36.1
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 3.8e-16 89.4 203 36.0
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 3.8e-16 89.4 177 37.9
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 4.9e-16 89.0 202 38.1
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 4.9e-16 89.0 202 35.6
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 4.9e-16 89.0 202 35.6
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 6.5e-16 88.6 211 35.5
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 6.5e-16 88.6 205 36.1
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 8.4e-16 88.2 156 39.7
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 8.4e-16 88.2 205 36.1
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.1e-15 87.8 198 37.4
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 1.4e-15 87.4 206 35.0
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 1.9e-15 87.0 193 35.8
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.9e-15 87.0 204 35.3
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.2e-15 86.3 160 37.5
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 3.2e-15 86.3 204 34.8
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 4.2e-15 85.9 160 37.5
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 4.2e-15 85.9 202 38.6
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.1e-15 85.1 199 34.7
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 7.1e-15 85.1 199 34.7
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 1.2e-14 84.3 198 35.4
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.6e-14 84.0 160 38.8
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 2.7e-14 83.2 188 37.2
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 3.5e-14 82.8 174 37.4
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 3.5e-14 82.8 197 37.1
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 4.6e-14 82.4 197 35.5
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 6.0e-14 82.0 160 38.1
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 6.0e-14 82.0 199 36.2
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 7.9e-14 81.6 196 35.2
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 7.9e-14 81.6 208 32.7
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 7.9e-14 81.6 198 34.8
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.0e-13 81.3 208 32.2
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.0e-13 81.3 200 34.0
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-13 81.3 49 81.6
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 1.3e-13 80.9 196 36.7
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.8e-13 80.5 202 34.7
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 2.3e-13 80.1 195 33.8
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 3.0e-13 79.7 195 32.8
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 3.0e-13 79.7 196 39.8
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 3.9e-13 79.3 162 37.0
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 3.9e-13 79.3 203 34.0
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 5.1e-13 79.0 204 33.8
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 6.7e-13 78.6 201 35.3
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 6.7e-13 78.6 199 35.2
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 8.7e-13 78.2 204 34.8
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 8.7e-13 78.2 204 34.8
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 8.7e-13 78.2 189 34.9
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.1e-12 77.8 201 34.8
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 1.5e-12 77.4 204 34.8
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.5e-12 77.4 158 36.1
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 1.9e-12 77.0 197 36.0
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 2.5e-12 76.6 158 36.1
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 2.5e-12 76.6 209 35.4
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 3.3e-12 76.3 164 40.2
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 5.7e-12 75.5 196 35.2
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 7.4e-12 75.1 158 35.4
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 7.4e-12 75.1 205 32.7
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 7.4e-12 75.1 205 34.1
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 9.6e-12 74.7 195 34.9
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 2.1e-11 73.6 162 35.8
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 8.2e-11 71.6 193 32.6
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 8.2e-11 71.6 193 32.6
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.4e-10 70.9 200 35.5
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.4e-10 70.9 136 38.2
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 1.8e-10 70.5 199 35.7
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-10 70.1 77 55.8
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 5.3e-10 68.9 194 35.1
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.5e-09 67.4 211 31.3
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.0e-09 67.0 193 33.2
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 2.6e-09 66.6 157 36.3
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 2.6e-09 66.6 157 36.3
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 1.0e-08 64.7 194 32.0
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 1.0e-08 64.7 194 32.0
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.7e-08 63.9 199 31.7
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 2.2e-08 63.5 195 32.8
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 2.2e-08 63.5 195 32.8
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 6.5e-08 62.0 195 32.3
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 6.5e-08 62.0 196 34.7
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 8.5e-08 61.6 162 36.4
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 1.1e-07 61.2 137 37.2
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 1.1e-07 61.2 194 35.1
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.1e-07 61.2 197 35.0
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 1.4e-07 60.8 195 32.3
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.9e-07 60.5 197 33.5
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.9e-07 60.5 197 35.5
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 1.9e-07 60.5 197 35.5
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 3.2e-07 59.7 198 36.9
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 9.3e-07 58.2 74 44.6
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 1.2e-06 57.8 159 35.2
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 1.6e-06 57.4 192 30.2
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 2.1e-06 57.0 163 31.9


User provided reference genes

Program Settings