Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 7.9e-94 347.1 169 100.0
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 7.9e-94 347.1 169 100.0
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-57 226.1 222 59.5
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-54 216.1 152 73.0
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-52 209.5 254 50.4
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-49 199.5 190 60.5
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-48 196.4 200 58.0
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-48 195.7 197 58.4
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 6.5e-48 194.5 189 58.7
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 3.2e-47 192.2 199 57.3
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-47 191.8 189 60.3
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 6.1e-46 188.0 187 57.8
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-45 187.2 185 60.5
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-44 183.7 196 55.6
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 7.5e-44 181.0 162 64.2
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 1.3e-43 180.3 232 50.4
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 7.2e-39 164.5 140 64.3
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-38 163.3 150 60.0
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-38 163.3 150 60.0
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-38 162.5 171 57.3
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-37 160.6 200 50.0
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-36 156.8 158 57.6
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 9.8e-36 154.1 203 49.8
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-35 152.1 174 53.4
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-34 149.1 166 54.2
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 4.1e-34 148.7 155 56.8
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 7.0e-34 147.9 123 65.9
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 2.7e-33 146.0 126 62.7
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 5.9e-33 144.8 156 54.5
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 8.6e-32 141.0 119 65.5
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-31 140.6 153 54.2
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 1.9e-31 139.8 136 58.8
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 1.9e-31 139.8 136 58.8
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 1.9e-31 139.8 135 59.3
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 1.9e-31 139.8 135 59.3
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 1.9e-31 139.8 135 59.3
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.5e-31 139.4 167 53.3
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 2.5e-31 139.4 135 59.3
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 2.5e-31 139.4 136 58.8
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 5.6e-31 138.3 135 58.5
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 5.6e-31 138.3 135 58.5
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 7.3e-31 137.9 137 56.9
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 9.5e-31 137.5 135 58.5
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 9.5e-31 137.5 137 57.7
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 1.2e-30 137.1 135 58.5
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 1.2e-30 137.1 135 58.5
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 1.2e-30 137.1 136 58.1
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 1.2e-30 137.1 135 58.5
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 1.2e-30 137.1 135 58.5
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 1.2e-30 137.1 135 58.5
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 1.2e-30 137.1 135 58.5
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 1.2e-30 137.1 135 58.5
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 1.6e-30 136.7 135 57.8
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 1.6e-30 136.7 135 57.8
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.1e-30 136.3 124 61.3
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.1e-30 136.3 124 61.3
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-30 136.3 117 65.0
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.8e-30 136.0 135 57.8
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.8e-30 136.0 135 57.8
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 3.6e-30 135.6 124 61.3
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 3.6e-30 135.6 124 61.3
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 4.7e-30 135.2 135 57.8
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 4.7e-30 135.2 133 57.9
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 4.7e-30 135.2 133 57.9
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 4.7e-30 135.2 167 52.1
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 6.1e-30 134.8 135 57.8
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 6.1e-30 134.8 135 57.8
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 6.1e-30 134.8 135 57.8
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 1.0e-29 134.0 135 57.8
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 1.0e-29 134.0 135 57.8
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.3e-29 132.9 135 57.0
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 3.1e-29 132.5 124 59.7
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 1.2e-28 130.6 124 59.7
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 9.8e-28 127.5 119 59.7
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 9.8e-28 127.5 139 54.7
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.7e-27 126.7 135 56.3
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 1.7e-27 126.7 136 54.4
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 2.9e-27 125.9 136 54.4
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-27 125.6 100 69.0
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 6.0e-25 118.2 114 59.6
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 6.0e-25 118.2 124 54.8
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 7.8e-25 117.9 125 56.0
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 3.0e-24 115.9 132 53.0
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-23 112.8 123 56.1
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-21 106.7 156 46.2
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-21 106.7 113 54.9
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 8.9e-21 104.4 163 43.6
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 1.5e-20 103.6 113 54.0
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 3.4e-20 102.4 105 57.1
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 4.4e-20 102.1 150 44.7
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 1.7e-19 100.1 97 59.8
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-19 99.0 95 57.9
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-19 99.0 99 56.6
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 6.4e-19 98.2 61 82.0
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 6.4e-19 98.2 61 82.0
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 6.4e-19 98.2 61 82.0
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 8.3e-19 97.8 114 52.6
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.4e-18 97.1 137 40.1
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 9.2e-18 94.4 51 92.2
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 9.2e-18 94.4 58 81.0
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 3.5e-17 92.4 95 58.9
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 3.5e-17 92.4 95 58.9
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.5e-17 92.4 61 75.4
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 8.6e-16 87.8 124 38.7
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 1.5e-15 87.0 54 81.5
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.6e-15 85.1 94 51.1
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.6e-14 82.4 61 68.9
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 8.9e-13 77.8 116 46.6
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 7.5e-12 74.7 63 65.1
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-11 73.6 35 94.3
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 4.9e-11 72.0 35 94.3
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 4.9e-11 72.0 35 94.3
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 4.9e-11 72.0 35 94.3
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 8.3e-11 71.2 35 91.4
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-10 70.9 35 91.4
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-10 70.5 35 91.4
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 2.4e-10 69.7 44 77.3
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-10 68.9 35 91.4
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-10 68.9 35 88.6
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-10 68.6 35 88.6
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 7.1e-10 68.2 35 91.4
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 9.2e-10 67.8 93 46.2
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 9.2e-10 67.8 87 48.3
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-09 67.4 35 88.6
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 2.7e-09 66.2 36 91.7
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-09 65.9 34 88.2
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 4.6e-09 65.5 36 88.9
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 7.8e-09 64.7 35 85.7
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 7.8e-09 64.7 35 85.7
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 7.8e-09 64.7 35 85.7
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 7.8e-09 64.7 35 85.7
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 7.8e-09 64.7 35 85.7
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 7.8e-09 64.7 35 85.7
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 7.8e-09 64.7 35 85.7
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 7.8e-09 64.7 35 85.7
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 7.8e-09 64.7 35 85.7
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 7.8e-09 64.7 35 85.7
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 2.3e-08 63.2 35 82.9
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 2.3e-08 63.2 35 82.9
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 2.3e-08 63.2 35 82.9
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 2.3e-08 63.2 35 82.9
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 2.3e-08 63.2 35 82.9
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 3.0e-08 62.8 35 82.9
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.9e-08 62.4 35 82.9
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.6e-08 61.2 35 80.0
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 1.1e-07 60.8 50 66.0
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.3e-07 58.9 35 77.1
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.6e-06 55.8 33 78.8
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.1e-06 54.7 34 79.4
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 8.1e-06 54.7 35 77.1


User provided reference genes

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