Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 4.7e-47 190.7 84 100.0
SHI53352 Sapria himalayana HOM05D003886 ORTHO05D004587 3.9e-17 91.3 39 94.9
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 8.9e-14 80.1 53 71.7
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 1.5e-13 79.3 51 72.5
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.5e-13 79.3 53 69.8
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 2.0e-13 79.0 43 83.7
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 70.6
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 2.6e-13 78.6 51 72.5
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 3.4e-13 78.2 51 70.6
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.4e-13 77.8 51 72.5
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.4e-13 77.8 51 72.5
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 4.4e-13 77.8 51 72.5
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 5.8e-13 77.4 51 68.6
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 5.8e-13 77.4 51 70.6
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 5.8e-13 77.4 51 70.6
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 5.8e-13 77.4 51 70.6
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 7.6e-13 77.0 51 70.6
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.6e-13 77.0 51 68.6
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 7.6e-13 77.0 43 79.1
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 7.6e-13 77.0 51 70.6
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 7.6e-13 77.0 51 70.6
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 7.6e-13 77.0 61 59.0
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 7.6e-13 77.0 43 81.4
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 7.6e-13 77.0 43 81.4
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 7.6e-13 77.0 43 81.4
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 7.6e-13 77.0 51 68.6
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 70.6
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 70.6
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 70.6
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 9.9e-13 76.6 43 79.1
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 9.9e-13 76.6 51 68.6
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.3e-12 76.3 51 68.6
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.3e-12 76.3 51 68.6
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.3e-12 76.3 51 68.6
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.3e-12 76.3 51 68.6
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.3e-12 76.3 51 68.6
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.3e-12 76.3 51 68.6
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.3e-12 76.3 53 66.0
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.3e-12 76.3 51 68.6
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.3e-12 76.3 51 68.6
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.3e-12 76.3 51 68.6
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.3e-12 76.3 53 66.0
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.3e-12 76.3 51 68.6
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.7e-12 75.9 51 68.6
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.7e-12 75.9 51 66.7
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.7e-12 75.9 51 68.6
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.7e-12 75.9 51 68.6
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.7e-12 75.9 51 68.6
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 2.2e-12 75.5 51 68.6
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.2e-12 75.5 43 79.1
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 2.2e-12 75.5 40 85.0
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 2.9e-12 75.1 43 81.4
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 2.9e-12 75.1 51 68.6
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.8e-12 74.7 53 64.2
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 3.8e-12 74.7 51 70.6
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 3.8e-12 74.7 39 76.9
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 3.8e-12 74.7 40 82.5
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 4.9e-12 74.3 51 68.6
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 4.9e-12 74.3 50 68.0
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 4.9e-12 74.3 51 66.7
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 4.9e-12 74.3 40 82.5
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 4.9e-12 74.3 40 82.5
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 6.4e-12 73.9 51 68.6
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 8.4e-12 73.6 51 66.7
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.1e-11 73.2 51 66.7
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.1e-11 73.2 51 66.7
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.4e-11 72.8 51 66.7
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.4e-11 72.8 51 64.7
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 4.1e-11 71.2 51 64.7
SHI40344 Sapria himalayana HOM05D000211 ORTHO05D009901 5.4e-11 70.9 37 78.4
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 7.1e-11 70.5 51 62.7
SHI12984 Sapria himalayana HOM05D000211 ORTHO05D009901 9.2e-11 70.1 37 78.4
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.2e-10 69.7 51 62.7
SHI37957 Sapria himalayana HOM05D000211 ORTHO05D009901 2.1e-10 68.9 37 78.4
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 2.7e-10 68.6 51 60.8
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 3.0e-09 65.1 51 60.8
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 5.6e-08 60.8 43 62.8
SHI25108 Sapria himalayana HOM05D003886 ORTHO05D365873 1.2e-07 59.7 36 69.4
SHI39144 Sapria himalayana HOM05D003886 ORTHO05D004587 3.6e-07 58.2 31 77.4
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.0e-06 54.7 39 59.0
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 4.0e-06 54.7 61 47.5


User provided reference genes

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