Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 9.2e-127 456.8 221 100.0
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 9.2e-127 456.8 221 100.0
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 5.1e-16 89.0 117 49.6
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.5e-15 86.7 123 44.7
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 4.7e-14 82.4 128 43.0
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 1.1e-13 81.3 126 39.7
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.3e-13 80.1 116 43.1
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.1e-13 79.7 123 40.7
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 3.1e-13 79.7 139 40.3
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 3.1e-13 79.7 124 41.9
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 5.2e-13 79.0 138 40.6
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 5.2e-13 79.0 125 40.0
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.2e-12 77.8 142 39.4
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 2.6e-12 76.6 142 39.4
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.8e-12 75.5 122 41.0
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 7.6e-12 75.1 144 38.2
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 9.9e-12 74.7 117 41.0
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 9.9e-12 74.7 128 40.6
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 9.9e-12 74.7 125 41.6
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 1.3e-11 74.3 125 38.4
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 6.4e-11 72.0 128 37.5
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.4e-11 72.0 118 43.2
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 8.4e-11 71.6 149 39.6
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 8.4e-11 71.6 142 38.0
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.1e-10 71.2 119 40.3
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.1e-10 71.2 140 40.7
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.1e-10 71.2 128 43.0
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.4e-10 70.9 135 38.5
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.4e-10 70.9 122 41.8
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 1.9e-10 70.5 133 42.1
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 2.4e-10 70.1 136 36.8
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 3.2e-10 69.7 138 34.8
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 5.4e-10 68.9 146 36.3
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 1.2e-09 67.8 118 41.5
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.6e-09 67.4 137 38.7
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 1.6e-09 67.4 118 41.5
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 3.5e-09 66.2 86 46.5
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.5e-09 66.2 137 38.7
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 4.6e-09 65.9 98 44.9
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 6.0e-09 65.5 124 39.5
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.3e-08 63.5 101 41.6
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.3e-08 63.5 135 37.8
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 3.0e-08 63.2 38 78.9
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 3.9e-08 62.8 111 39.6
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 3.9e-08 62.8 41 70.7
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 1.1e-07 61.2 115 40.9
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.1e-07 61.2 138 35.5
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.5e-07 60.8 128 36.7
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.5e-07 60.8 65 52.3
Lsat_1_v5_gn_5_156980 Lactuca sativa HOM05D002974 ORTHO05D002992 1.9e-07 60.5 113 38.1
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.9e-07 60.5 118 36.4
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.9e-07 60.5 53 54.7
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.5e-07 60.1 129 39.5
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 2.5e-07 60.1 127 33.9
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 3.3e-07 59.7 121 37.2
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 3.3e-07 59.7 37 81.1
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 4.3e-07 59.3 79 46.8
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 4.3e-07 59.3 115 40.0
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.3e-07 59.3 133 35.3
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 5.6e-07 58.9 43 60.5
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.6e-07 58.9 134 37.3
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 7.3e-07 58.5 38 71.1
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 7.3e-07 58.5 61 45.9
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 9.6e-07 58.2 47 59.6
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 9.6e-07 58.2 122 33.6
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 9.6e-07 58.2 118 38.1
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.2e-06 57.8 37 75.7
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 1.2e-06 57.8 69 49.3
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 1.2e-06 57.8 50 62.0
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 1.6e-06 57.4 40 67.5
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 1.6e-06 57.4 129 38.8
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 2.1e-06 57.0 53 54.7
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 2.1e-06 57.0 130 36.2
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 2.1e-06 57.0 68 48.5
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 2.8e-06 56.6 127 35.4
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.8e-06 56.6 111 35.1
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 2.8e-06 56.6 110 36.4
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 4.7e-06 55.8 60 56.7
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 4.7e-06 55.8 50 58.0
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 4.7e-06 55.8 59 50.8
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 4.7e-06 55.8 40 67.5
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 4.7e-06 55.8 34 73.5
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.2e-06 55.5 123 38.2
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 6.2e-06 55.5 68 45.6
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 8.1e-06 55.1 55 56.4
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 8.1e-06 55.1 45 66.7


User provided reference genes

Program Settings