Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 2.7e-51 204.9 93 100.0
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 3.5e-19 98.2 54 88.9
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.3e-17 91.7 53 84.9
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.1e-12 73.9 73 49.3
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 2.1e-11 72.4 53 66.0
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.5e-11 71.6 53 66.0
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 4.6e-11 71.2 53 66.0
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 6.0e-11 70.9 53 64.2
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 6.0e-11 70.9 53 64.2
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 7.8e-11 70.5 53 64.2
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 7.8e-11 70.5 53 64.2
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.0e-10 70.1 53 64.2
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 1.0e-10 70.1 53 62.3
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.0e-10 70.1 55 56.4
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 1.0e-10 70.1 53 62.3
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.0e-10 70.1 53 64.2
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 1.0e-10 70.1 53 64.2
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 1.3e-10 69.7 59 59.3
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 1.3e-10 69.7 53 60.4
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 1.3e-10 69.7 50 66.0
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.3e-10 69.7 53 64.2
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.7e-10 69.3 53 62.3
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.3e-10 68.9 53 62.3
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.3e-10 68.9 53 62.3
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.3e-10 68.9 53 62.3
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 2.3e-10 68.9 53 62.3
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 2.3e-10 68.9 50 62.0
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 2.3e-10 68.9 53 60.4
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 3.0e-10 68.6 53 60.4
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 3.0e-10 68.6 53 60.4
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.0e-10 68.6 53 62.3
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 3.9e-10 68.2 53 62.3
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 5.1e-10 67.8 53 62.3
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 5.1e-10 67.8 53 62.3
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 5.1e-10 67.8 53 62.3
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 5.1e-10 67.8 53 62.3
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 5.1e-10 67.8 60 56.7
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 5.1e-10 67.8 53 56.6
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 6.6e-10 67.4 53 58.5
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 6.6e-10 67.4 53 58.5
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 6.6e-10 67.4 50 60.0
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 6.6e-10 67.4 53 60.4
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 6.6e-10 67.4 55 58.2
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 8.7e-10 67.0 50 62.0
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 8.7e-10 67.0 53 56.6
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 8.7e-10 67.0 51 58.8
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 8.7e-10 67.0 51 58.8
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.1e-09 66.6 49 61.2
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.1e-09 66.6 49 61.2
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.1e-09 66.6 49 61.2
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 1.1e-09 66.6 53 62.3
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.1e-09 66.6 53 62.3
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.1e-09 66.6 53 62.3
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.1e-09 66.6 53 58.5
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.1e-09 66.6 53 60.4
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 1.5e-09 66.2 53 58.5
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.9e-09 65.9 50 58.0
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 1.9e-09 65.9 54 55.6
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.9e-09 65.9 45 68.9
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.9e-09 65.9 45 68.9
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.9e-09 65.9 45 68.9
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 1.9e-09 65.9 53 60.4
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 1.9e-09 65.9 53 60.4
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.9e-09 65.9 53 58.5
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.9e-09 65.9 53 56.6
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.9e-09 65.9 53 60.4
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.9e-09 65.9 55 56.4
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.5e-09 65.5 49 59.2
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 2.5e-09 65.5 53 56.6
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 2.5e-09 65.5 53 58.5
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.3e-09 65.1 53 58.5
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 4.3e-09 64.7 53 58.5
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 4.3e-09 64.7 50 62.0
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 5.6e-09 64.3 54 55.6
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 5.6e-09 64.3 66 47.0
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 5.6e-09 64.3 66 47.0
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 5.6e-09 64.3 50 58.0
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 5.6e-09 64.3 53 56.6
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 5.6e-09 64.3 53 56.6
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 5.6e-09 64.3 53 56.6
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 5.6e-09 64.3 52 57.7
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 7.3e-09 63.9 52 59.6
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 9.6e-09 63.5 54 53.7
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 9.6e-09 63.5 45 66.7
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 9.6e-09 63.5 53 54.7
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 9.6e-09 63.5 51 58.8
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 9.6e-09 63.5 53 56.6
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.3e-08 63.2 58 50.0
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 2.1e-08 62.4 54 53.7
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.1e-08 62.4 53 54.7
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 2.1e-08 62.4 53 54.7
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.8e-08 62.0 45 66.7
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.8e-08 62.0 45 64.4
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 3.6e-08 61.6 51 51.0
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.6e-08 61.6 50 60.0
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 3.6e-08 61.6 50 60.0
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 4.8e-08 61.2 53 52.8
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 8.1e-08 60.5 53 52.8
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 8.1e-08 60.5 51 49.0
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 8.1e-08 60.5 50 54.0
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 8.1e-08 60.5 52 55.8
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 1.1e-07 60.1 50 54.0
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.1e-07 60.1 50 54.0
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 1.4e-07 59.7 51 49.0
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 1.4e-07 59.7 52 53.8
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.8e-07 59.3 50 50.0
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.8e-07 59.3 53 50.9
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.8e-07 59.3 51 49.0
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.8e-07 59.3 55 47.3
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.4e-07 58.9 50 52.0
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 2.4e-07 58.9 33 72.7
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.3e-07 57.8 32 75.0
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.5e-06 56.2 50 52.0
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 3.4e-06 55.1 49 46.9
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.4e-06 54.7 40 60.0


User provided reference genes

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