Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 1.2e-120 436.4 206 100.0
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 1.3e-85 320.1 197 77.7
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.6e-56 222.2 225 53.3
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 4.5e-51 205.3 103 95.1
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 2.2e-50 203.0 103 92.2
SHI41529 Sapria himalayana HOM05D004598 ORTHO05D005550 2.6e-46 189.5 103 89.3
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 6.1e-32 141.7 205 42.4
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.0e-30 136.7 224 38.8
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 6.3e-29 131.7 241 35.7
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.0e-27 126.7 191 37.7
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.4e-23 114.0 346 26.3
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 1.2e-22 110.9 330 29.1
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 5.8e-22 108.6 330 28.2
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 9.8e-22 107.8 339 26.8
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 2.2e-21 106.7 325 28.6
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 4.9e-21 105.5 330 25.8
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.1e-20 104.4 331 26.6
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 2.4e-20 103.2 332 28.3
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 2.4e-20 103.2 332 27.7
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 5.4e-20 102.1 327 27.5
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.2e-19 100.9 331 27.5
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 1.2e-19 100.9 332 26.2
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.2e-19 100.9 332 25.9
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.2e-19 100.9 330 27.0
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.2e-19 100.9 331 26.0
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 1.2e-19 100.9 298 28.9
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 2.0e-19 100.1 331 27.5
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 2.0e-19 100.1 331 26.6
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 2.0e-19 100.1 329 26.7
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.7e-19 99.8 330 26.1
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 2.7e-19 99.8 331 26.9
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 3.5e-19 99.4 336 27.1
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 3.5e-19 99.4 330 26.1
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 3.5e-19 99.4 330 26.4
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 6.0e-19 98.6 333 25.5
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.8e-19 98.2 335 25.1
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.8e-19 98.2 335 25.1
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.8e-19 98.2 334 25.4
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 1.0e-18 97.8 335 26.9
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 1.0e-18 97.8 327 27.8
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.0e-18 97.8 341 24.9
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.3e-18 97.4 331 26.3
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.7e-18 97.1 335 26.6
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.7e-18 97.1 340 26.8
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.7e-18 97.1 340 26.8
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.7e-18 97.1 351 26.5
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 2.3e-18 96.7 325 27.1
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.3e-18 96.7 328 27.7
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.3e-18 96.7 331 25.1
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 2.3e-18 96.7 330 26.1
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 3.0e-18 96.3 334 26.9
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 3.0e-18 96.3 332 27.4
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 3.9e-18 95.9 340 27.9
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 3.9e-18 95.9 331 26.0
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 3.9e-18 95.9 345 25.8
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 5.0e-18 95.5 337 24.9
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 5.0e-18 95.5 331 25.1
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 5.0e-18 95.5 341 26.1
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 8.6e-18 94.7 335 26.3
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 8.6e-18 94.7 356 24.2
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 8.6e-18 94.7 369 24.7
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 8.6e-18 94.7 343 27.7
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.1e-17 94.4 339 27.1
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.5e-17 94.0 340 26.8
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.9e-17 93.6 340 26.2
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.9e-17 93.6 334 26.0
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 1.9e-17 93.6 117 43.6
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.5e-17 93.2 339 26.8
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 2.5e-17 93.2 331 26.0
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 2.5e-17 93.2 332 26.8
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 2.5e-17 93.2 327 26.3
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 3.3e-17 92.8 332 26.2
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 4.3e-17 92.4 332 26.8
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 5.6e-17 92.0 324 24.4
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 7.3e-17 91.7 131 41.2
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 1.2e-16 90.9 338 25.1
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.2e-16 90.9 341 27.0
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.2e-16 90.9 331 25.7
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.6e-16 90.5 113 43.4
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.6e-16 90.5 178 34.8
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 2.1e-16 90.1 332 26.2
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 2.1e-16 90.1 118 43.2
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 2.1e-16 90.1 324 24.7
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 2.8e-16 89.7 60 66.7
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.8e-16 89.7 60 66.7
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 3.6e-16 89.4 60 68.3
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 3.6e-16 89.4 335 25.4
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 4.7e-16 89.0 178 34.8
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 6.2e-16 88.6 335 25.4
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 1.1e-15 87.8 62 61.3
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.4e-15 87.4 62 64.5
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.4e-15 87.4 321 25.2
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 3.1e-15 86.3 323 26.3
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 3.1e-15 86.3 323 26.3
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 4.0e-15 85.9 65 61.5
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 4.0e-15 85.9 60 65.0
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 6.8e-15 85.1 59 67.8
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 8.9e-15 84.7 59 66.1
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 8.9e-15 84.7 59 64.4
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.2e-14 84.3 59 62.7
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.5e-14 84.0 317 24.6
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 2.6e-14 83.2 59 62.7
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 2.6e-14 83.2 59 62.7
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 2.6e-14 83.2 59 62.7
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 2.6e-14 83.2 60 63.3
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 2.6e-14 83.2 60 63.3
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 3.4e-14 82.8 59 62.7
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 3.4e-14 82.8 59 62.7
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 3.4e-14 82.8 59 62.7
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 3.4e-14 82.8 320 21.9
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 3.4e-14 82.8 60 61.7
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 3.4e-14 82.8 59 64.4
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 4.4e-14 82.4 59 59.3
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 4.4e-14 82.4 59 59.3
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 7.5e-14 81.6 59 62.7
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 1.3e-13 80.9 59 64.4
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.3e-13 80.9 60 60.0
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.7e-13 80.5 59 62.7
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.7e-13 80.5 59 57.6
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.2e-13 80.1 280 26.8
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 3.7e-13 79.3 59 59.3
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 4.1e-12 75.9 61 54.1
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 7.0e-12 75.1 58 58.6
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 6.6e-10 68.6 103 35.0
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.1e-09 67.8 65 55.4
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 1.5e-09 67.4 53 56.6
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.9e-09 67.0 136 33.1
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 2.5e-09 66.6 52 61.5
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 2.5e-09 66.6 52 57.7
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.3e-09 66.2 56 55.4
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 7.3e-09 65.1 43 60.5
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.2e-08 64.3 126 32.5
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.2e-08 64.3 38 81.6
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 1.2e-08 64.3 45 60.0
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.1e-08 63.5 51 60.8
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 2.1e-08 63.5 65 49.2
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.1e-08 63.5 60 55.0
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.8e-08 63.2 49 59.2
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 3.6e-08 62.8 317 21.5
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 1.1e-07 61.2 59 40.7
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 4.0e-07 59.3 58 51.7
SHI43370 Sapria himalayana HOM05D004598 ORTHO05D005550 6.8e-07 58.5 74 48.6
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 2.6e-06 56.6 50 54.0


User provided reference genes

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