Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 8.7e-128 460.3 229 100.0
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.5e-18 97.4 119 47.9
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 7.3e-18 95.1 127 45.7
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 2.1e-17 93.6 122 48.4
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.8e-17 93.2 122 48.4
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 3.6e-17 92.8 127 47.2
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 4.7e-17 92.4 122 49.2
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.2e-17 92.0 124 50.0
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 6.2e-17 92.0 127 47.2
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 8.1e-17 91.7 124 50.0
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 8.1e-17 91.7 132 47.0
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.1e-16 91.3 132 47.0
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.4e-16 90.9 125 46.4
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.8e-16 90.5 127 47.2
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 2.4e-16 90.1 127 48.0
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.4e-16 90.1 122 47.5
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 4.0e-16 89.4 132 46.2
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 5.2e-16 89.0 131 45.8
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 5.2e-16 89.0 111 47.7
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 6.8e-16 88.6 129 46.5
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 6.8e-16 88.6 132 45.5
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.5e-15 87.4 129 45.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.0e-15 87.0 124 48.4
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 2.0e-15 87.0 124 46.8
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 2.6e-15 86.7 130 45.4
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 3.4e-15 86.3 110 49.1
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 4.4e-15 85.9 128 46.1
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.4e-15 85.9 127 45.7
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.8e-15 85.5 126 46.8
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 7.6e-15 85.1 133 46.6
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 9.9e-15 84.7 127 46.5
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.3e-14 84.3 118 49.2
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.7e-14 84.0 122 47.5
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.7e-14 84.0 129 44.2
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.7e-14 84.0 132 44.7
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.2e-14 83.6 124 45.2
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 2.9e-14 83.2 123 45.5
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 2.9e-14 83.2 122 45.1
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 3.8e-14 82.8 127 44.9
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 3.8e-14 82.8 123 45.5
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 3.8e-14 82.8 124 44.4
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 4.9e-14 82.4 127 43.3
SHI29807 Sapria himalayana HOM05D012376 ORTHO05D000014 4.9e-14 82.4 42 88.1
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.9e-14 82.4 112 46.4
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 6.4e-14 82.0 120 46.7
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 6.4e-14 82.0 126 46.0
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 6.4e-14 82.0 120 45.0
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.4e-14 82.0 124 43.5
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 6.4e-14 82.0 125 44.8
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 6.4e-14 82.0 111 49.5
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 8.4e-14 81.6 122 46.7
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 8.4e-14 81.6 122 45.1
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-13 81.3 123 45.5
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.4e-13 80.9 118 44.1
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.4e-13 80.9 122 45.1
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 2.4e-13 80.1 123 44.7
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.2e-13 79.7 124 42.7
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 4.2e-13 79.3 119 45.4
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 4.2e-13 79.3 122 44.3
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 5.4e-13 79.0 125 41.6
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 5.4e-13 79.0 129 45.0
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 7.1e-13 78.6 123 43.9
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 7.1e-13 78.6 125 42.4
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 9.3e-13 78.2 120 43.3
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 9.3e-13 78.2 65 61.5
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.6e-12 77.4 125 44.0
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 2.1e-12 77.0 70 58.6
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 2.1e-12 77.0 70 58.6
SHI28534 Sapria himalayana HOM05D005377 ORTHO05D003034 2.1e-12 77.0 69 56.5
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.7e-12 76.6 124 42.7
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 3.5e-12 76.3 65 61.5
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.5e-12 76.3 116 45.7
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.6e-12 75.9 113 46.0
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 4.6e-12 75.9 120 41.7
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 4.6e-12 75.9 65 60.0
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 4.6e-12 75.9 121 42.1
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 4.6e-12 75.9 124 42.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 6.0e-12 75.5 123 43.9
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.8e-12 75.1 68 58.8
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 7.8e-12 75.1 63 61.9
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 7.8e-12 75.1 126 41.3
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.8e-12 75.1 122 42.6
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.0e-11 74.7 128 42.2
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.0e-11 74.7 125 44.0
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.0e-11 74.7 125 43.2
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.0e-11 74.7 125 43.2
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.0e-11 74.7 65 60.0
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.3e-11 74.3 120 41.7
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.3e-11 74.3 127 40.9
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.7e-11 73.9 101 39.6
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.7e-11 73.9 125 44.0
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.3e-11 73.6 123 42.3
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.0e-11 73.2 123 40.7
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.0e-11 73.2 123 40.7
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 3.9e-11 72.8 113 42.5
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 3.9e-11 72.8 65 58.5
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.1e-11 72.4 127 42.5
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 5.1e-11 72.4 124 40.3
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 6.6e-11 72.0 123 45.5
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 8.7e-11 71.6 127 41.7
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.7e-11 71.6 127 41.7
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.7e-11 71.6 127 41.7
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.7e-11 71.6 127 41.7
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 8.7e-11 71.6 59 59.3
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.1e-10 71.2 119 43.7
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 2.5e-10 70.1 123 42.3
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 2.5e-10 70.1 122 38.5
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 3.3e-10 69.7 105 43.8
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 3.3e-10 69.7 116 44.0
SHI24842 Sapria himalayana HOM05D002580 ORTHO05D002811 3.3e-10 69.7 62 59.7
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 3.3e-10 69.7 124 45.2
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 4.3e-10 69.3 106 43.4
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.3e-10 69.3 65 53.8
SHI18641 Sapria himalayana HOM05D002580 ORTHO05D002811 4.3e-10 69.3 41 80.5
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 7.3e-10 68.6 116 43.1
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 7.3e-10 68.6 115 41.7
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 9.6e-10 68.2 118 39.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.6e-09 67.4 70 51.4
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.1e-09 67.0 119 42.0
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.6e-09 66.2 105 43.8
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 4.8e-09 65.9 98 39.8
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.8e-09 65.9 111 42.3
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 6.2e-09 65.5 98 37.8
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 6.2e-09 65.5 118 42.4
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 6.2e-09 65.5 115 40.9
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.1e-08 64.7 66 45.5
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.1e-08 64.7 55 60.0
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.1e-08 64.7 105 40.0
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 2.4e-08 63.5 99 43.4
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 2.4e-08 63.5 55 60.0
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 2.4e-08 63.5 55 58.2
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.4e-08 63.5 114 42.1
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 5.3e-08 62.4 65 52.3
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 9.0e-08 61.6 64 53.1
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 9.0e-08 61.6 108 40.7
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.2e-07 61.2 132 39.4
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.5e-07 60.8 103 39.8
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 2.0e-07 60.5 65 47.7
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 3.4e-07 59.7 128 37.5
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 3.4e-07 59.7 64 51.6
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 3.4e-07 59.7 64 51.6
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 4.4e-07 59.3 64 51.6
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 4.4e-07 59.3 64 51.6
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 4.4e-07 59.3 67 46.3
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 5.8e-07 58.9 54 57.4
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.8e-07 58.9 64 53.1
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 9.9e-07 58.2 124 37.9
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 2.9e-06 56.6 55 58.2
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 2.9e-06 56.6 55 58.2
SHI17520 Sapria himalayana HOM05D004343 ORTHO05D005695 6.4e-06 55.5 45 62.2


User provided reference genes

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