Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 0.0e+00 1221.1 597 100.0
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 7.7e-160 568.2 606 57.9
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 7.0e-153 545.0 385 76.4
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.3e-151 540.8 606 55.4
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.4e-145 520.0 581 56.1
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 7.2e-142 508.4 592 54.1
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 5.7e-139 498.8 298 85.6
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 2.0e-136 490.3 592 53.0
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 2.0e-136 490.3 548 55.8
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.6e-133 480.7 577 52.5
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 2.0e-131 473.8 552 53.3
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.1e-129 466.1 581 52.5
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.0e-127 461.5 577 50.8
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.2e-125 454.5 549 51.0
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 4.9e-122 442.6 538 51.9
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 4.0e-116 422.9 577 48.0
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.7e-114 416.4 587 47.9
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.3e-111 407.1 546 47.6
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 8.6e-111 405.2 577 46.4
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.3e-110 403.3 546 47.4
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 7.3e-110 402.1 548 47.3
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 7.3e-110 402.1 548 47.3
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 3.6e-109 399.8 548 47.1
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.4e-108 397.9 577 46.6
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 4.0e-108 396.4 548 46.9
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 4.0e-108 396.4 548 46.9
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 6.8e-108 395.6 581 46.5
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.7e-106 391.0 578 46.0
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 6.4e-106 389.0 525 48.4
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.2e-104 384.8 592 45.4
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.7e-104 383.6 546 45.2
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.5e-91 341.3 553 44.3
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 5.8e-91 339.3 249 75.5
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 2.9e-90 337.0 235 77.9
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 7.1e-89 332.4 235 77.4
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 1.6e-88 331.3 206 83.5
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.6e-88 331.3 235 77.0
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 5.1e-87 326.2 256 72.7
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.5e-86 324.7 235 76.6
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.5e-86 323.9 235 76.2
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.4e-84 317.4 204 81.4
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 1.5e-83 314.7 239 74.9
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 1.3e-82 311.6 239 74.5
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 1.7e-82 311.2 235 73.6
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 2.9e-82 310.5 235 73.6
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 7.1e-81 305.8 577 39.9
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.2e-80 305.1 195 81.0
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 7.9e-80 302.4 208 78.8
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 7.9e-80 302.4 204 78.9
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.0e-79 302.0 237 73.0
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.1e-77 294.3 235 70.2
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 1.3e-74 285.0 235 70.6
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-74 284.6 208 75.0
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-74 284.6 208 75.0
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-74 284.6 208 75.0
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-74 284.6 208 75.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.7e-74 284.6 220 73.6
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.7e-74 284.6 220 73.6
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.7e-74 284.6 220 73.6
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 2.2e-74 284.3 575 38.1
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 4.9e-74 283.1 233 69.5
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 7.1e-73 279.3 343 51.6
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.2e-72 278.5 220 72.7
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 2.1e-72 277.7 235 68.5
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 2.4e-68 264.2 336 50.9
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 1.5e-67 261.5 563 37.1
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 5.8e-67 259.6 216 67.6
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 5.8e-67 259.6 216 67.6
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 5.8e-67 259.6 216 67.6
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 5.8e-67 259.6 216 67.6
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 5.8e-67 259.6 216 67.6
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 5.8e-67 259.6 216 67.6
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 5.5e-65 253.1 229 65.5
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-62 245.4 139 87.1
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 8.2e-61 239.2 151 82.1
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 8.5e-58 229.2 179 68.2
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.4e-57 228.4 549 36.2
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 1.9e-57 228.0 182 67.6
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 5.5e-57 226.5 148 81.1
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 2.7e-56 224.2 177 68.4
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 2.7e-56 224.2 177 68.4
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 2.7e-56 224.2 177 68.4
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 6.1e-56 223.0 124 87.9
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.0e-55 222.2 177 67.8
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 1.0e-55 222.2 177 67.8
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.0e-55 222.2 177 67.8
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 3.0e-55 220.7 139 79.9
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 3.0e-55 220.7 139 79.9
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 8.8e-55 219.2 139 79.1
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 1.5e-54 218.4 116 89.7
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.5e-54 217.6 185 65.9
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 9.7e-54 215.7 239 57.7
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.7e-53 214.9 139 77.7
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 2.2e-53 214.5 139 78.4
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 2.8e-53 214.2 172 67.4
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 2.8e-53 214.2 177 65.0
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 4.8e-53 213.4 134 80.6
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 9.1e-52 209.1 121 83.5
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.6e-51 207.6 172 65.7
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 7.7e-51 206.1 121 83.5
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.9e-50 204.1 148 75.7
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.8e-47 194.9 174 62.6
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 3.0e-47 194.1 128 77.3
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 5.1e-47 193.4 187 58.8
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 5.1e-47 193.4 187 58.8
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.3e-46 190.7 172 61.0
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.6e-43 181.0 101 84.2
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.2e-42 177.9 119 76.5
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 3.8e-42 177.2 296 43.2
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 8.5e-42 176.0 466 31.8
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 7.2e-41 172.9 151 65.6
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 9.4e-41 172.6 165 63.0
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 9.4e-41 172.6 92 89.1
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-40 171.8 121 72.7
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.2e-39 166.8 108 79.6
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.0e-38 164.9 161 58.4
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 3.7e-37 160.6 136 70.6
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.2e-35 155.6 95 82.1
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 3.5e-35 154.1 136 63.2
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-34 152.5 86 86.0
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.7e-34 151.8 114 71.1
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.2e-33 146.4 346 33.8
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 3.3e-30 137.5 111 72.1
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 5.7e-30 136.7 78 79.5
arahy.Tifrunner.gnm1.ann1.FZ2FI3 Arachis hypogaea HOM05D003430 ORTHO05D014065 4.8e-29 133.7 229 43.2
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.8e-29 133.7 140 59.3
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 4.5e-27 127.1 104 61.5
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 5.0e-26 123.6 154 52.6
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 5.0e-26 123.6 154 52.6
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 3.2e-25 120.9 76 73.7
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 5.5e-25 120.2 147 53.1
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 4.0e-23 114.0 74 73.0
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 4.0e-23 114.0 78 71.8
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 7.7e-19 99.8 116 57.8
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-17 94.7 112 49.1
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.2e-17 94.0 104 52.9
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 5.5e-17 93.6 111 55.0
arahy.Tifrunner.gnm1.ann1.MDP5TU Arachis hypogaea HOM05D003430 ORTHO05D014065 1.6e-16 92.0 93 60.2
arahy.Tifrunner.gnm1.ann1.SLB19S Arachis hypogaea HOM05D003430 ORTHO05D014065 1.6e-16 92.0 93 60.2
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-15 88.6 66 68.2
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 3.0e-15 87.8 68 60.3
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.5e-14 85.5 54 77.8
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 2.0e-14 85.1 63 68.3
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 8.3e-13 79.7 150 36.7
arahy.Tifrunner.gnm1.ann1.U8L35G Arachis hypogaea HOM05D003430 ORTHO05D014065 2.4e-12 78.2 43 90.7
Sc11g0004430 Simmondsia chinensis HOM05D003430 ORTHO05D014065 3.2e-12 77.8 49 81.6
arahy.Tifrunner.gnm1.ann1.B82PT4 Arachis hypogaea HOM05D003430 ORTHO05D014065 3.5e-11 74.3 43 86.0
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 4.5e-11 73.9 65 60.0
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-10 72.4 57 66.7
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 5.0e-10 70.5 78 52.6
arahy.Tifrunner.gnm1.ann1.MTT5DF Arachis hypogaea HOM05D003430 ORTHO05D014065 1.5e-09 68.9 38 89.5
BraSC54t46374Z Brassica rapa HOM05D003430 ORTHO05D014065 2.1e-08 65.1 63 61.9
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 2.1e-08 65.1 96 46.9
BraSC48t46246Z Brassica rapa HOM05D003430 ORTHO05D014065 6.1e-08 63.5 36 88.9
BraSC77t46629Z Brassica rapa HOM05D003430 ORTHO05D014065 6.1e-08 63.5 36 88.9
Dinv06858 Davidia involucrata HOM05D003430 ORTHO05D014065 6.1e-08 63.5 34 91.2
C01p34970 Brassica napus HOM05D003430 ORTHO05D014065 1.0e-07 62.8 36 88.9
BolC1t03463H Brassica oleracea HOM05D003430 ORTHO05D014065 1.0e-07 62.8 36 88.9
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 1.4e-07 62.4 44 68.2
SHI44639 Sapria himalayana HOM05D000030 ORTHO05D000009 4.0e-07 60.8 55 58.2
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 4.0e-07 60.8 72 55.6
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.0e-06 58.5 109 39.4
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 4.4e-06 57.4 42 73.8
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 9.8e-06 56.2 44 70.5


User provided reference genes

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