Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 2.2e-35 151.8 76 100.0
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.6e-14 82.4 55 69.1
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.6e-14 81.3 55 65.5
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 3.6e-14 81.3 55 69.1
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.4e-13 79.3 55 67.3
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.8e-13 79.0 51 72.5
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 2.4e-13 78.6 55 63.6
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 3.1e-13 78.2 55 67.3
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 3.1e-13 78.2 55 67.3
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 3.1e-13 78.2 55 67.3
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.1e-13 78.2 54 68.5
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.1e-13 78.2 58 58.6
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.1e-13 78.2 57 66.7
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 4.0e-13 77.8 55 69.1
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 4.0e-13 77.8 55 65.5
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.0e-13 77.8 54 66.7
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 5.2e-13 77.4 55 63.6
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 5.2e-13 77.4 55 65.5
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 5.2e-13 77.4 77 53.2
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 5.2e-13 77.4 55 65.5
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 6.8e-13 77.0 55 63.6
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 6.8e-13 77.0 55 63.6
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 6.8e-13 77.0 55 63.6
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 6.8e-13 77.0 55 63.6
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 6.8e-13 77.0 55 67.3
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 6.8e-13 77.0 55 67.3
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 6.8e-13 77.0 55 63.6
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 6.8e-13 77.0 55 63.6
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 6.8e-13 77.0 55 63.6
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 8.9e-13 76.6 55 63.6
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 8.9e-13 76.6 59 59.3
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 8.9e-13 76.6 58 60.3
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 8.9e-13 76.6 52 69.2
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 8.9e-13 76.6 51 66.7
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 8.9e-13 76.6 52 63.5
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.2e-12 76.3 55 61.8
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.2e-12 76.3 55 61.8
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.2e-12 76.3 55 61.8
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.2e-12 76.3 55 61.8
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.2e-12 76.3 55 63.6
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.2e-12 76.3 55 65.5
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.5e-12 75.9 55 65.5
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.5e-12 75.9 55 63.6
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.5e-12 75.9 53 64.2
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.5e-12 75.9 55 63.6
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.5e-12 75.9 50 72.0
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.5e-12 75.9 55 61.8
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.5e-12 75.9 55 63.6
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.5e-12 75.9 51 64.7
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 2.0e-12 75.5 54 63.0
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 2.0e-12 75.5 55 63.6
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 2.0e-12 75.5 54 63.0
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.0e-12 75.5 55 65.5
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.0e-12 75.5 55 65.5
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.0e-12 75.5 59 59.3
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.0e-12 75.5 59 59.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.6e-12 75.1 51 68.6
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 2.6e-12 75.1 54 63.0
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.6e-12 75.1 52 67.3
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 2.6e-12 75.1 55 61.8
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 2.6e-12 75.1 55 61.8
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 2.6e-12 75.1 52 63.5
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 3.4e-12 74.7 55 61.8
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.4e-12 74.7 52 67.3
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.4e-12 74.7 51 68.6
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 3.4e-12 74.7 55 61.8
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.4e-12 74.7 55 61.8
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 3.4e-12 74.7 54 64.8
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 3.4e-12 74.7 54 61.1
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 4.4e-12 74.3 55 60.0
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.4e-12 74.3 55 60.0
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.4e-12 74.3 55 58.2
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 5.8e-12 73.9 55 61.8
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 5.8e-12 73.9 55 63.6
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 5.8e-12 73.9 55 63.6
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 5.8e-12 73.9 54 61.1
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 5.8e-12 73.9 55 60.0
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 5.8e-12 73.9 55 60.0
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 5.8e-12 73.9 55 60.0
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 5.8e-12 73.9 55 60.0
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 7.6e-12 73.6 54 63.0
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 7.6e-12 73.6 54 63.0
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 7.6e-12 73.6 54 63.0
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 7.6e-12 73.6 55 60.0
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 9.9e-12 73.2 54 61.1
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 9.9e-12 73.2 55 61.8
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 9.9e-12 73.2 53 62.3
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 9.9e-12 73.2 55 61.8
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 9.9e-12 73.2 52 67.3
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.9e-12 73.2 55 61.8
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.3e-11 72.8 55 60.0
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.3e-11 72.8 54 64.8
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.3e-11 72.8 54 64.8
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.3e-11 72.8 56 58.9
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.3e-11 72.8 54 64.8
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.3e-11 72.8 54 64.8
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.7e-11 72.4 55 61.8
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.7e-11 72.4 55 58.2
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.7e-11 72.4 54 63.0
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.7e-11 72.4 54 63.0
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.7e-11 72.4 54 63.0
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.7e-11 72.4 54 63.0
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.2e-11 72.0 54 63.0
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.2e-11 72.0 54 63.0
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.9e-11 71.6 54 61.1
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 2.9e-11 71.6 52 65.4
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.9e-11 71.6 59 57.6
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.8e-11 71.2 55 61.8
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.8e-11 71.2 55 61.8
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.8e-11 71.2 55 61.8
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.8e-11 71.2 51 62.7
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 4.9e-11 70.9 54 61.1
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 4.9e-11 70.9 54 61.1
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 4.9e-11 70.9 54 61.1
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 4.9e-11 70.9 54 61.1
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 4.9e-11 70.9 55 58.2
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 6.4e-11 70.5 55 60.0
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 8.4e-11 70.1 52 61.5
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 8.4e-11 70.1 52 65.4
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.4e-11 70.1 55 60.0
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 8.4e-11 70.1 54 61.1
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.1e-10 69.7 55 58.2
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.1e-10 69.7 55 61.8
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.9e-10 68.9 54 61.1
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.9e-10 68.9 52 65.4
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.9e-10 68.9 55 58.2
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 2.4e-10 68.6 54 57.4
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 7.1e-10 67.0 55 56.4
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 9.2e-10 66.6 55 56.4
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 9.2e-10 66.6 52 61.5
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.2e-09 66.2 54 59.3
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.6e-09 65.9 55 54.5
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.6e-09 65.9 53 60.4
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.1e-09 65.5 52 59.6
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.1e-09 65.5 52 59.6
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.7e-09 65.1 53 58.5
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 3.5e-09 64.7 63 54.0
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 4.6e-09 64.3 59 55.9
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 4.6e-09 64.3 59 55.9
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.0e-08 63.2 52 55.8
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.0e-08 63.2 52 55.8
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.7e-08 62.4 52 55.8
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 2.3e-08 62.0 59 54.2
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 3.0e-08 61.6 53 54.7
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.1e-07 59.7 46 63.0
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.9e-07 58.9 53 54.7
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 4.3e-07 57.8 50 52.0
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 8.1e-06 53.5 56 46.4
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 8.1e-06 53.5 33 69.7


User provided reference genes

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