Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI41364 Sapria himalayana HOM05D006604 ORTHO05D007974 6.0e-112 407.5 207 100.0
SHI42031 Sapria himalayana HOM05D006604 ORTHO05D007974 6.0e-112 407.5 207 100.0
SHI54324 Sapria himalayana HOM05D006604 ORTHO05D007974 2.6e-107 392.1 207 96.6
SHI53023 Sapria himalayana HOM05D006604 ORTHO05D007974 3.0e-103 378.6 231 86.1
RcHm_v2.0_MTg0498771 Rosa chinensis HOM05D006604 ORTHO05D007974 4.8e-93 344.7 230 79.6
Nn1g10085 Nelumbo nucifera HOM05D006604 ORTHO05D007974 1.5e-91 339.7 230 78.3
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 5.9e-91 337.8 230 78.3
FAN20G1951 Fragaria x ananassa HOM05D006604 ORTHO05D007974 2.9e-90 335.5 230 77.0
CAN.G659.3 Capsicum annuum HOM05D006604 ORTHO05D007974 1.9e-89 332.8 230 78.3
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 9.3e-89 330.5 225 78.7
Aqoxy1G02966 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 1.6e-88 329.7 231 76.6
Aqoxy12s025 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 2.1e-88 329.3 231 76.6
PGR028G0012 Punica granatum HOM05D006604 ORTHO05D007974 1.3e-87 326.6 227 77.1
HanXRQMTg0579671 Helianthus annuus HOM05D006604 ORTHO05D007974 8.8e-87 323.9 223 78.0
HanXRQChr11g0320231 Helianthus annuus HOM05D006604 ORTHO05D007974 1.7e-85 319.7 223 77.1
SHI50293 Sapria himalayana HOM05D006604 ORTHO05D007974 2.8e-85 318.9 200 83.5
CANSAT16G0041 Cannabis sativa HOM05D006604 ORTHO05D007974 3.7e-85 318.5 223 76.7
Lalb_Chr00c29g0408041 Lupinus albus HOM05D006604 ORTHO05D007974 1.0e-82 310.5 225 74.7
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 6.5e-82 307.8 223 74.4
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 6.5e-82 307.8 223 74.4
ATMG01170 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 6.5e-82 307.8 223 74.4
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 6.5e-82 307.8 223 74.4
CARHR283400 Cardamine hirsuta HOM05D006604 ORTHO05D007974 6.5e-82 307.8 223 74.4
BcaB06g27871 Brassica carinata HOM05D006604 ORTHO05D007974 2.5e-81 305.8 223 73.5
BolSC28t60364H Brassica oleracea HOM05D006604 ORTHO05D007974 2.5e-81 305.8 223 73.5
BraSC177t45762Z Brassica rapa HOM05D006604 ORTHO05D007974 2.5e-81 305.8 223 73.5
BraSC48t46229Z Brassica rapa HOM05D006604 ORTHO05D007974 2.5e-81 305.8 223 73.5
BraSC48t46317Z Brassica rapa HOM05D006604 ORTHO05D007974 2.5e-81 305.8 223 73.5
arahy.Tifrunner.gnm1.ann1.QPI8J1 Arachis hypogaea HOM05D006604 ORTHO05D007974 1.4e-79 300.1 230 71.7
BraSC54t46362Z Brassica rapa HOM05D006604 ORTHO05D007974 1.8e-79 299.7 224 72.8
Lalb_Chr01g0011021 Lupinus albus HOM05D006604 ORTHO05D007974 6.7e-79 297.7 224 72.8
Nn044s41811 Nelumbo nucifera HOM05D006604 ORTHO05D007974 3.7e-77 292.0 199 77.9
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 6.5e-74 281.2 199 75.4
SalBow1G2924 Salvia bowleyana HOM05D006604 ORTHO05D007974 7.4e-70 267.7 207 71.5
HanXRQChr13g0388581 Helianthus annuus HOM05D006604 ORTHO05D007974 1.3e-69 266.9 210 71.0
SEGI_16408 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 1.1e-68 263.8 230 64.3
SEGI_09870 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 2.4e-68 262.7 230 64.3
SEGI_30085 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 3.1e-68 262.3 230 63.9
CsaV3_UNG209110 Cucumis sativus L. HOM05D006604 ORTHO05D007974 1.6e-67 260.0 202 71.3
SEGI_38071 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 1.6e-67 260.0 223 65.9
Gorai.001G160500 Gossypium raimondii HOM05D006604 ORTHO05D007974 5.2e-63 245.0 227 62.6
RcHm_v2.0_Chr6g0256721 Rosa chinensis HOM05D006604 ORTHO05D007974 1.6e-59 233.4 176 72.7
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.0e-58 230.7 224 62.9
SGA_v2.0_scaffold245G44658 Striga asiatica HOM05D006604 ORTHO05D007974 1.5e-57 226.9 206 63.6
Nitab4.5_0006806g0110 Nicotiana tabacum HOM05D006604 ORTHO05D007974 4.2e-57 225.3 200 67.0
Lsat_1_v5_gn_5_16121 Lactuca sativa HOM05D006604 ORTHO05D007974 2.1e-56 223.0 199 65.3
LjContig00446g0008739 Lotus japonicus HOM05D006604 ORTHO05D007974 5.7e-54 214.9 166 71.1
BolSC28t60307H Brassica oleracea HOM05D006604 ORTHO05D007974 1.3e-53 213.8 166 71.1
LjContig00439g0024190 Lotus japonicus HOM05D006604 ORTHO05D007974 1.5e-49 200.3 153 72.5
SHI50562 Sapria himalayana HOM05D006604 ORTHO05D007974 2.9e-42 176.0 142 71.8
Lj2P1232T107 Lonicera japonica HOM05D006604 ORTHO05D007974 8.6e-42 174.5 206 51.5
SHI36367 Sapria himalayana HOM05D006604 ORTHO05D007974 4.3e-41 172.2 142 70.4
SHI36697 Sapria himalayana HOM05D006604 ORTHO05D007974 5.6e-41 171.8 142 70.4
arahy.Tifrunner.gnm1.ann1.I4ZC3D Arachis hypogaea HOM05D006604 ORTHO05D007974 7.3e-41 171.4 117 77.8
SHI37564 Sapria himalayana HOM05D006604 ORTHO05D007974 2.1e-40 169.9 142 71.8
EL10Ac2g04656 Beta vulgaris HOM05D001314 ORTHO05D001165 1.0e-39 167.5 101 83.2
SHI35295 Sapria himalayana HOM05D006604 ORTHO05D007974 2.0e-38 163.3 183 53.6
ClCG00G004290 Citrullus lanatus HOM05D006604 ORTHO05D007974 5.8e-38 161.8 142 66.9
SHI35759 Sapria himalayana HOM05D006604 ORTHO05D007974 1.7e-34 150.2 75 97.3
SHI35478 Sapria himalayana HOM05D006604 ORTHO05D007974 2.1e-32 143.3 75 96.0
SHI54304 Sapria himalayana HOM05D006604 ORTHO05D007974 2.8e-32 142.9 72 95.8
SHI51349 Sapria himalayana HOM05D006604 ORTHO05D007974 4.7e-32 142.1 72 93.1
Os12g0424180 Oryza sativa ssp. japonica HOM05D006604 ORTHO05D007974 1.3e-29 134.0 95 73.7
LjContig00439g0025482 Lotus japonicus HOM05D006604 ORTHO05D007974 2.2e-29 133.3 76 86.8
RcHm_v2.0_Chr7g0231141 Rosa chinensis HOM05D006604 ORTHO05D007974 8.3e-29 131.3 76 85.5
DCAR_031658 Daucus carota HOM05D006604 ORTHO05D007974 1.9e-28 130.2 75 86.7
Nitab4.5_0002404g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.4e-28 129.8 104 69.2
SHI28635 Sapria himalayana HOM05D006604 ORTHO05D007974 3.5e-27 125.9 153 54.2
arahy.Tifrunner.gnm1.ann1.NC5V37 Arachis hypogaea HOM05D006604 ORTHO05D007974 7.8e-27 124.8 78 78.2
Glyma.16G133700 Glycine max HOM05D006604 ORTHO05D007974 7.8e-27 124.8 73 83.6
GSVIVG01023423001 Vitis vinifera HOM05D006604 ORTHO05D007974 7.8e-27 124.8 73 84.9
Nn7g37740 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.3e-26 123.2 67 91.0
SMO053G0007 Selaginella moellendorffii HOM05D006604 ORTHO05D007974 5.1e-26 122.1 204 42.2
MELO3C027032.2 Cucumis melo HOM05D006604 ORTHO05D007974 8.6e-26 121.3 70 85.7
SHI53009 Sapria himalayana HOM05D006604 ORTHO05D007974 7.3e-25 118.2 126 60.3
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 9.5e-25 117.9 68 88.2
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 9.5e-25 117.9 68 88.2
CARHR288250 Cardamine hirsuta HOM05D006604 ORTHO05D007974 9.5e-25 117.9 78 79.5
unitig_87.g28014 Utricularia gibba HOM05D006604 ORTHO05D007974 2.1e-24 116.7 63 88.9
ClCG06G009210 Citrullus lanatus HOM05D006604 ORTHO05D007974 3.6e-24 115.9 133 53.4
Nitab4.5_0002418g0200 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.4e-23 114.0 121 57.0
Potri.014G168000 Populus trichocarpa HOM05D006604 ORTHO05D007974 1.8e-23 113.6 104 62.5
BolC1t03444H Brassica oleracea HOM05D006604 ORTHO05D007974 5.2e-23 112.1 68 79.4
SHI33922 Sapria himalayana HOM05D006604 ORTHO05D007974 6.8e-23 111.7 129 53.5
Peaxi162Scf00000g01811 Petunia axillaris HOM05D006604 ORTHO05D007974 1.2e-22 110.9 194 43.3
Nn2g15525 Nelumbo nucifera HOM05D006604 ORTHO05D007974 7.5e-22 108.2 57 93.0
Glyma.01G103450 Glycine max HOM05D006604 ORTHO05D007974 2.2e-21 106.7 74 75.7
MELO3C027524.2 Cucumis melo HOM05D006604 ORTHO05D007974 4.9e-21 105.5 62 83.9
SHI55017 Sapria himalayana HOM05D006604 ORTHO05D007974 8.3e-21 104.8 54 94.4
SHI35935 Sapria himalayana HOM05D006604 ORTHO05D007974 3.2e-20 102.8 60 83.3
MELO3C029409.2 Cucumis melo HOM05D006604 ORTHO05D007974 1.6e-19 100.5 61 83.6
MELO3C034885.2 Cucumis melo HOM05D006604 ORTHO05D007974 2.1e-19 100.1 60 80.0
MD15G1429600 Malus domestica HOM05D006604 ORTHO05D007974 3.3e-17 92.8 66 74.2
ATR0392G001 Amborella trichopoda HOM05D006604 ORTHO05D007974 1.2e-16 90.9 78 64.1
SHI37140 Sapria himalayana HOM05D006604 ORTHO05D007974 1.2e-16 90.9 44 95.5
SHI36463 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-15 87.8 43 95.3
Aa31csc464G30 Aethionema arabicum HOM05D006604 ORTHO05D007974 2.4e-15 86.7 53 77.4
Nn6g31985 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.6e-14 83.2 47 87.2
Nitab4.5_0005246g0050 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.7e-13 80.5 118 48.3
SHI01303 Sapria himalayana HOM05D006604 ORTHO05D007974 1.7e-13 80.5 57 73.7
SHI27524 Sapria himalayana HOM05D006604 ORTHO05D007974 4.9e-13 79.0 64 62.5
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 1.4e-12 77.4 46 78.3
SHI12109 Sapria himalayana HOM05D006604 ORTHO05D007974 3.2e-12 76.3 47 78.7
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 4.2e-12 75.9 107 45.8
Eucgr.D01303 Eucalyptus grandis HOM05D006604 ORTHO05D007974 9.2e-12 74.7 40 82.5
C01p34770 Brassica napus HOM05D013555 ORTHO05D016062 1.6e-11 73.9 43 79.1
Nitab4.5_0002418g0090 Nicotiana tabacum HOM05D006604 ORTHO05D007974 3.5e-11 72.8 44 81.8
C01p34870 Brassica napus HOM05D013555 ORTHO05D016062 1.0e-10 71.2 42 78.6
SHI36366 Sapria himalayana HOM05D006604 ORTHO05D007974 4.3e-09 65.9 32 100.0
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.6e-08 63.9 78 50.0
ECA039G0009 Erigeron canadensis HOM05D008105 ORTHO05D010309 3.6e-08 62.8 38 84.2
SHI31173 Sapria himalayana HOM05D006604 ORTHO05D007974 3.6e-08 62.8 141 36.9
SHI01304 Sapria himalayana HOM05D006604 ORTHO05D007974 1.8e-07 60.5 87 49.4
ECA003G0002 Erigeron canadensis HOM05D006604 ORTHO05D007974 5.3e-07 58.9 36 83.3
SHI36696 Sapria himalayana HOM05D006604 ORTHO05D007974 5.3e-07 58.9 28 100.0
SHI37563 Sapria himalayana HOM05D006604 ORTHO05D007974 5.3e-07 58.9 30 93.3
SHI50563 Sapria himalayana HOM05D006604 ORTHO05D007974 5.3e-07 58.9 28 100.0
Mapoly1449s0001 Marchantia polymorpha HOM05D006604 ORTHO05D007974 1.5e-06 57.4 175 25.1
Medtr0248s0030 Medicago truncatula HOM05D006604 ORTHO05D007974 5.8e-06 55.5 34 82.4
ClCG07G016010 Citrullus lanatus HOM05D006604 ORTHO05D007974 7.6e-06 55.1 33 78.8
BcaC02g07607 Brassica carinata HOM05D001561 ORTHO05D012158 9.9e-06 54.7 32 75.0


User provided reference genes

Program Settings