Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI41337 Sapria himalayana HOM05D000222 ORTHO05D000329 3.9e-31 137.5 69 100.0
SHI14784 Sapria himalayana HOM05D000222 ORTHO05D011388 7.3e-14 80.1 69 65.2
SHI38014 Sapria himalayana HOM05D000222 ORTHO05D000329 4.0e-12 74.3 41 85.4
SHI08058 Sapria himalayana HOM05D000222 ORTHO05D000329 6.9e-12 73.6 68 58.8
ATR0810G217 Amborella trichopoda HOM05D000222 ORTHO05D000329 9.0e-12 73.2 68 57.4
Aqoxy1G02465 Aquilegia oxysepala HOM05D000222 ORTHO05D000329 9.0e-12 73.2 68 57.4
Aqoxy6G02232 Aquilegia oxysepala HOM05D000222 ORTHO05D000329 9.0e-12 73.2 68 57.4
DCAR_013875 Daucus carota HOM05D000222 ORTHO05D000329 9.0e-12 73.2 68 57.4
HanXRQChr13g0387091 Helianthus annuus HOM05D000222 ORTHO05D000329 9.0e-12 73.2 68 57.4
Os06g0716700 Oryza sativa ssp. japonica HOM05D000222 ORTHO05D000329 9.0e-12 73.2 68 57.4
TAR381G1457 Trochodendron aralioides HOM05D000222 ORTHO05D000329 9.0e-12 73.2 68 57.4
TAR536G0015 Trochodendron aralioides HOM05D000222 ORTHO05D000329 9.0e-12 73.2 68 57.4
TAR628G0053 Trochodendron aralioides HOM05D000222 ORTHO05D000329 9.0e-12 73.2 68 57.4
SHI46803 Sapria himalayana HOM05D000222 ORTHO05D000329 1.5e-11 72.4 37 91.9
MSTRG.25258 Avicennia marina HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 57.4
CSS0018705 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 57.4
Lalb_Chr03g0033421 Lupinus albus HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 57.4
MBI05_g33509_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 55.9
MBI05_g33510_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 55.9
Nn5g30723 Nelumbo nucifera HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 55.9
Potri.005G241100 Populus trichocarpa HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 57.4
QL02p011881 Quercus lobata HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 57.4
Sabra05G0186600 Salix brachista HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 57.4
SHI51760 Sapria himalayana HOM05D000222 ORTHO05D000329 2.0e-11 72.0 37 91.9
VMungo0647G1547 Vigna mungo HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 57.4
Zm00001eb272290 Zea mays HOM05D000222 ORTHO05D000329 2.0e-11 72.0 68 57.4
CDE05G2968 Ceratophyllum demersum HOM05D000222 ORTHO05D000329 2.6e-11 71.6 68 55.9
ECA233G5047 Erigeron canadensis HOM05D000222 ORTHO05D000329 2.6e-11 71.6 68 55.9
Atru.chr13.271 Acer truncatum HOM05D000222 ORTHO05D000329 3.4e-11 71.2 68 57.4
Dinv39529 Davidia involucrata HOM05D000222 ORTHO05D000329 3.4e-11 71.2 68 57.4
Phvul.001G005200 Phaseolus vulgaris HOM05D000222 ORTHO05D000329 3.4e-11 71.2 68 57.4
Actinidia15430 Actinidia chinensis HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
MSTRG.1183 Avicennia marina HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
EL10Ac1g02175 Beta vulgaris HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Cfa013966 Carpinus fangiana HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
ClCG08G014210 Citrullus lanatus HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Ciclev10000296m.g Citrus clementina HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
COL.COLO4_26130 Corchorus olitorius HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Haze_22648 Corylus avellana HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
MELO3C011021.2 Cucumis melo HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
CsaV3_2G029630 Cucumis sativus L. HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
DCAR_023014 Daucus carota HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Dinv31859 Davidia involucrata HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Migut.C00851 Erythranthe guttata HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Migut.N03167 Erythranthe guttata HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Eucgr.H00972 Eucalyptus grandis HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Lsat_1_v5_gn_8_30781 Lactuca sativa HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Lj4C22T9 Lonicera japonica HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Lj4C798T7 Lonicera japonica HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Lalb_Chr19g0131441 Lupinus albus HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Manes.18G012200 Manihot esculenta HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Manes.18G012500 Manihot esculenta HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Nitab4.5_0000337g0060 Nicotiana tabacum HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Nitab4.5_0000337g0070 Nicotiana tabacum HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Nitab4.5_0003251g0080 Nicotiana tabacum HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Oeu046282.1 Olea europaea HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
PSO541G0316 Papaver somniferum HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
PSO675G6717 Papaver somniferum HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Peaxi162Scf00553g00114 Petunia axillaris HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
SalBow8G4062 Salvia bowleyana HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Sed0002325 Sechium edule HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Sed0003929 Sechium edule HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Sc15g0004910 Simmondsia chinensis HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
SGA_v2.0_scaffold11G05934 Striga asiatica HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
TWI12G1180 Tripterygium wilfordii HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
TWI56G0657 Tripterygium wilfordii HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
HPP92_012933 Vanilla planifolia HOM05D000222 ORTHO05D000329 4.5e-11 70.9 68 55.9
Cc10_g01540 Coffea canephora HOM05D000222 ORTHO05D000329 5.8e-11 70.5 68 54.4
Medtr1g025430 Medicago truncatula HOM05D000222 ORTHO05D000329 5.8e-11 70.5 68 54.4
TPR.G26394 Trifolium pratense HOM05D000222 ORTHO05D000329 5.8e-11 70.5 68 54.4
CDE05G1631 Ceratophyllum demersum HOM05D000222 ORTHO05D000329 7.6e-11 70.1 68 54.4
Nn6g32037 Nelumbo nucifera HOM05D000222 ORTHO05D000329 7.6e-11 70.1 68 54.4
Sc02g0008650 Simmondsia chinensis HOM05D000222 ORTHO05D000329 7.6e-11 70.1 68 54.4
GSVIVG01009931001 Vitis vinifera HOM05D000222 ORTHO05D000329 7.6e-11 70.1 68 55.9
Zm00001eb228120 Zea mays HOM05D000222 ORTHO05D000329 7.6e-11 70.1 68 55.9
Psat6g002360 Pisum sativum HOM05D000222 ORTHO05D000329 9.9e-11 69.7 68 54.4
Duzib093G0379 Durio zibethinus HOM05D000222 ORTHO05D000329 1.3e-10 69.3 68 54.4
Duzib116G0368 Durio zibethinus HOM05D000222 ORTHO05D000329 1.3e-10 69.3 68 54.4
Gohir.A06G002800 Gossypium hirsutum HOM05D000222 ORTHO05D000329 1.3e-10 69.3 68 54.4
Gohir.A06G002900 Gossypium hirsutum HOM05D000222 ORTHO05D000329 1.3e-10 69.3 68 54.4
Gohir.D06G005800 Gossypium hirsutum HOM05D000222 ORTHO05D000329 1.3e-10 69.3 68 54.4
Gohir.D06G005900 Gossypium hirsutum HOM05D000222 ORTHO05D000329 1.3e-10 69.3 68 54.4
Gorai.010G003000 Gossypium raimondii HOM05D000222 ORTHO05D000329 1.3e-10 69.3 68 54.4
Hund05159 Selenicereus undatus HOM05D000222 ORTHO05D000329 1.3e-10 69.3 68 54.4
Hma1.2p1_0733F.1_g210310 Hydrangea macrophylla HOM05D000222 ORTHO05D000329 1.7e-10 68.9 67 55.2
Lj5g0005976 Lotus japonicus HOM05D000222 ORTHO05D000329 1.7e-10 68.9 67 55.2
PGR083G1489 Punica granatum HOM05D000222 ORTHO05D000329 1.7e-10 68.9 67 55.2
Gohir.D01G097100 Gossypium hirsutum HOM05D000222 ORTHO05D000329 2.2e-10 68.6 68 54.4
Gorai.002G122800 Gossypium raimondii HOM05D000222 ORTHO05D000329 2.2e-10 68.6 68 54.4
Lalb_Chr11g0061831 Lupinus albus HOM05D000222 ORTHO05D000329 2.2e-10 68.6 68 54.4
Mapoly0031s0145 Marchantia polymorpha HOM05D000222 ORTHO05D000329 2.2e-10 68.6 68 52.9
SHI39705 Sapria himalayana HOM05D000222 ORTHO05D000329 2.2e-10 68.6 37 89.2
SHI51988 Sapria himalayana HOM05D000222 ORTHO05D000329 2.2e-10 68.6 37 89.2
arahy.Tifrunner.gnm1.ann1.P8FSM4 Arachis hypogaea HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 52.9
arahy.Tifrunner.gnm1.ann1.T76A9L Arachis hypogaea HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 52.9
CANSAT78G1241 Cannabis sativa HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
CAN.G311.42 Capsicum annuum HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
AUR62040542 Chenopodium quinoa HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
AUR62041482 Chenopodium quinoa HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
Glyma.14G219700 Glycine max HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
Glyma.17G258700 Glycine max HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
Lalb_Chr08g0246171 Lupinus albus HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
Peaxi162Scf00553g00086 Petunia axillaris HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
Solyc04g081570.3 Solanum lycopersicum HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
Sopen04g035180 Solanum pennellii HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
PGSC0003DMG400009940 Solanum tuberosum HOM05D000222 ORTHO05D000329 2.9e-10 68.2 68 54.4
AagrBONN_evm.TU.Sc2ySwM_344.3459 Anthoceros agrestis HOM05D000222 ORTHO05D000329 3.8e-10 67.8 68 51.5
Ca_13433_v3 Cicer arietinum L. HOM05D000222 ORTHO05D000329 3.8e-10 67.8 68 52.9
Potri.002G020249 Populus trichocarpa HOM05D000222 ORTHO05D014703 3.8e-10 67.8 68 55.9
CiPaw.08G067100 Carya illinoinensis HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 52.9
FvH4_2g38300 Fragaria vesca HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 54.4
FAN15G0622 Fragaria x ananassa HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 54.4
FAN20G2674 Fragaria x ananassa HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 54.4
FAN27G0624 Fragaria x ananassa HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 54.4
Gohir.A01G110500 Gossypium hirsutum HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 52.9
MD08G1011200 Malus domestica HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 54.4
Prupe.1G363900 Prunus persica HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 54.4
RcHm_v2.0_Chr6g0303071 Rosa chinensis HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 54.4
THA.LOC104813226 Tarenaya hassleriana HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 52.9
Thecc.08G046300 Theobroma cacao HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 52.9
vmacro04362 Vaccinium macrocarpon HOM05D000222 ORTHO05D000329 4.9e-10 67.4 68 52.9
BolC8t48563H Brassica oleracea HOM05D000222 ORTHO05D000329 6.4e-10 67.0 76 51.3
HanXRQChr12g0366871 Helianthus annuus HOM05D000222 ORTHO05D000329 6.4e-10 67.0 68 52.9
SMO116G0137 Selaginella moellendorffii HOM05D000222 ORTHO05D000329 6.4e-10 67.0 68 54.4
SHI51495 Sapria himalayana HOM05D000222 ORTHO05D000329 8.4e-10 66.6 37 83.8
Aa31sc288G10 Aethionema arabicum HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
AL7G29090 Arabidopsis lyrata HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
AT4G24190 Arabidopsis thaliana HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
BcaC09g50898 Brassica carinata HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
BcaNung01125 Brassica carinata HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
A01p15520 Brassica napus HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
A03p55100 Brassica napus HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
A08p21570 Brassica napus HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
C01p19440 Brassica napus HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
C07p53420 Brassica napus HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
BraA01t01491Z Brassica rapa HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
BraA03t14570Z Brassica rapa HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
BraA08t34104Z Brassica rapa HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
Carub.0007s1690 Capsella rubella HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
CARHR231600 Cardamine hirsuta HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
Thhalv10024414m.g Eutrema salsugineum HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
Sp7g22160 Schrenkiella parvula HOM05D000222 ORTHO05D000329 1.1e-09 66.2 67 52.2
BolC1t01873H Brassica oleracea HOM05D000222 ORTHO05D000329 1.4e-09 65.9 72 54.2
BolC7t45836H Brassica oleracea HOM05D000222 ORTHO05D000329 1.4e-09 65.9 67 53.7
Cre02.g080650 Chlamydomonas reinhardtii HOM05D000222 ORTHO05D000329 2.4e-09 65.1 67 52.2
CBR_g34543 Chara braunii HOM05D000222 ORTHO05D000329 3.2e-09 64.7 68 51.5
BcaC07g38137 Brassica carinata HOM05D000222 ORTHO05D000329 4.2e-09 64.3 69 50.7
Pp3c14_3360 Physcomitrium patens HOM05D000222 ORTHO05D000329 5.4e-09 63.9 67 50.7
SEGI_06170 Sequoiadendron giganteum HOM05D000222 ORTHO05D000329 7.1e-09 63.5 68 50.0
Pp3c8_6510 Physcomitrium patens HOM05D000222 ORTHO05D000329 4.6e-08 60.8 68 47.1
PRCOL_00003444 Prasinoderma coloniale HOM05D000222 ORTHO05D000329 5.1e-07 57.4 67 43.3
Rhsim06G0020200 Rhododendron simsii HOM05D000222 ORTHO05D000329 6.7e-07 57.0 63 52.4
MCO04G117 Micromonas commoda HOM05D000222 ORTHO05D000329 1.1e-06 56.2 45 62.2
SHI50494 Sapria himalayana HOM05D000222 ORTHO05D000329 9.6e-06 53.1 28 89.3


User provided reference genes

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