Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 6.9e-210 733.8 387 100.0
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.5e-63 246.9 226 63.7
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 4.6e-57 226.1 158 73.4
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 5.1e-56 222.6 248 54.8
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 4.4e-39 166.4 156 52.6
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 4.1e-37 159.8 269 38.3
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 7.0e-37 159.1 276 39.5
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.2e-36 158.3 270 38.5
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.6e-36 157.9 190 47.9
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.0e-36 157.5 185 47.6
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.0e-36 157.5 163 48.5
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.5e-36 156.8 267 39.0
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 3.5e-36 156.8 282 37.9
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 4.5e-36 156.4 267 39.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 4.5e-36 156.4 270 39.3
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.9e-36 156.0 267 39.0
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 5.9e-36 156.0 273 37.7
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 7.7e-36 155.6 272 37.1
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.0e-35 155.2 185 47.6
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.0e-35 155.2 165 49.7
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.3e-35 154.8 261 36.8
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.7e-35 154.5 156 48.1
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.7e-35 154.5 175 48.0
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.7e-35 154.5 175 48.0
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.7e-35 154.5 156 50.6
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 2.2e-35 154.1 185 47.6
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 2.2e-35 154.1 284 37.0
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 3.8e-35 153.3 162 52.5
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 3.8e-35 153.3 284 37.0
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 5.0e-35 152.9 258 39.5
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 6.5e-35 152.5 159 53.5
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 6.5e-35 152.5 166 50.6
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 8.5e-35 152.1 162 50.6
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 8.5e-35 152.1 156 51.9
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.1e-34 151.8 185 45.4
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.1e-34 151.8 173 47.4
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.1e-34 151.8 280 36.8
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.1e-34 151.8 282 37.2
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.5e-34 151.4 167 46.7
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.5e-34 151.4 272 37.5
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.9e-34 151.0 261 38.7
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.9e-34 151.0 156 52.6
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.9e-34 151.0 157 50.3
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.5e-34 150.6 155 49.7
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 4.2e-34 149.8 170 48.2
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 5.5e-34 149.4 170 48.8
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 7.2e-34 149.1 176 46.0
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 7.2e-34 149.1 285 35.4
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 7.2e-34 149.1 159 49.1
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 7.2e-34 149.1 162 48.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 7.2e-34 149.1 156 47.4
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.4e-34 148.7 272 37.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.2e-33 148.3 156 50.0
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.6e-33 147.9 272 37.1
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.6e-33 147.9 284 37.7
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 2.1e-33 147.5 264 39.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 2.7e-33 147.1 285 35.1
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 2.7e-33 147.1 159 49.7
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 2.7e-33 147.1 254 40.6
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 2.7e-33 147.1 277 36.5
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.7e-33 147.1 274 37.6
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.6e-33 146.7 266 38.0
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.6e-33 146.7 254 38.6
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 4.7e-33 146.4 162 50.0
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 6.1e-33 146.0 152 47.4
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.0e-32 145.2 261 38.3
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.0e-32 145.2 159 49.7
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.4e-32 144.8 158 48.1
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.4e-32 144.8 158 49.4
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.4e-32 144.8 163 48.5
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.4e-32 144.8 157 44.6
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.8e-32 144.4 161 49.1
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 4.0e-32 143.3 158 48.7
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 4.0e-32 143.3 157 43.3
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 6.8e-32 142.5 262 39.7
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 8.8e-32 142.1 157 47.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 8.8e-32 142.1 158 48.1
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.2e-31 141.7 154 48.1
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.2e-31 141.7 180 42.2
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.2e-31 141.7 180 42.2
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.2e-31 141.7 158 46.8
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.0e-31 141.0 156 45.5
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.0e-31 141.0 156 45.5
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.0e-31 141.0 156 48.7
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 2.6e-31 140.6 160 48.8
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 4.4e-31 139.8 157 45.2
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 5.7e-31 139.4 169 46.2
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 5.7e-31 139.4 155 47.1
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 5.7e-31 139.4 154 50.0
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 9.7e-31 138.7 157 47.1
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-30 138.3 156 45.5
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-30 138.3 156 45.5
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.7e-30 137.9 161 46.0
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 4.8e-30 136.3 260 34.6
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 6.3e-30 136.0 157 46.5
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.8e-29 134.4 156 46.8
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 2.4e-29 134.0 162 43.8
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 7.0e-29 132.5 160 43.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.2e-28 131.7 169 45.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.5e-28 130.2 267 37.1
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.5e-28 129.8 171 43.9
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 4.5e-28 129.8 171 43.9
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 4.5e-28 129.8 155 45.2
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 7.7e-28 129.0 267 34.1
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 1.0e-27 128.6 259 34.4
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.3e-27 128.3 160 45.0
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.3e-27 128.3 209 38.8
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 2.9e-27 127.1 188 42.0
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.5e-27 125.6 275 35.6
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.1e-26 125.2 155 42.6
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.1e-26 125.2 156 44.9
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.9e-26 124.4 202 37.1
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 4.2e-26 123.2 169 41.4
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 3.6e-25 120.2 155 45.8
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 8.0e-25 119.0 151 43.7
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.8e-24 115.5 190 39.5
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 2.0e-23 114.4 128 50.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.0e-23 114.4 139 45.3
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.7e-22 111.3 129 49.6
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.1e-21 108.6 156 39.1
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.8e-21 107.8 134 44.8
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.5e-20 103.6 158 40.5
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.0e-19 102.1 205 32.7
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.3e-19 100.9 151 39.1
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.5e-18 98.2 74 59.5
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 3.3e-18 97.1 149 40.3
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 7.2e-18 95.9 73 63.0
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.8e-16 91.3 73 57.5
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.5e-15 88.2 154 37.7
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 3.4e-15 87.0 179 35.2
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 5.7e-15 86.3 73 52.1
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 3.7e-14 83.6 114 39.5
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 4.1e-13 80.1 68 54.4
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.3e-11 75.1 220 30.0
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.9e-10 71.2 104 37.5
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 2.5e-10 70.9 54 59.3
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 2.5e-10 70.9 54 59.3
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.5e-10 70.9 49 65.3
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 5.6e-10 69.7 84 41.7
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.7e-09 66.6 46 63.0
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.1e-08 63.9 53 56.6
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-08 63.5 184 25.0
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 5.2e-08 63.2 49 61.2
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.0e-07 61.2 101 37.6
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.3e-06 58.5 62 48.4


User provided reference genes

Program Settings