Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 8.4e-108 393.7 193 100.0
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 8.4e-108 393.7 193 100.0
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 4.2e-91 338.2 189 84.7
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 2.7e-90 335.5 189 84.1
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 2.7e-90 335.5 189 84.7
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 3.0e-89 332.0 189 83.1
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 3.9e-89 331.6 189 82.5
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 5.1e-89 331.3 189 83.1
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.1e-88 330.1 189 83.6
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 1.1e-88 330.1 189 81.5
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 1.5e-88 329.7 189 82.0
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 1.5e-88 329.7 189 82.0
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 2.5e-88 328.9 189 81.5
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 2.5e-88 328.9 189 81.5
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 3.3e-88 328.6 189 81.0
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 3.3e-88 328.6 189 82.5
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 4.3e-88 328.2 189 80.4
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 4.3e-88 328.2 189 82.5
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 5.7e-88 327.8 189 81.0
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.3e-87 326.6 189 80.4
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.3e-87 326.6 189 80.4
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 1.3e-87 326.6 189 83.6
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 1.3e-87 326.6 189 81.5
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 2.1e-87 325.9 189 81.5
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 2.1e-87 325.9 190 82.1
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 2.8e-87 325.5 189 83.1
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 3.7e-87 325.1 191 80.6
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 3.7e-87 325.1 189 81.0
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 4.8e-87 324.7 189 81.0
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 4.8e-87 324.7 189 81.5
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 4.8e-87 324.7 189 79.9
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 6.2e-87 324.3 189 80.4
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 6.2e-87 324.3 189 82.0
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 6.2e-87 324.3 189 80.4
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 1.4e-86 323.2 189 81.0
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 1.8e-86 322.8 191 80.1
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 1.8e-86 322.8 189 79.4
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.8e-86 322.8 189 79.4
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.8e-86 322.8 189 80.4
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 1.8e-86 322.8 189 80.4
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 1.8e-86 322.8 189 82.5
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 3.1e-86 322.0 189 79.4
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 4.0e-86 321.6 189 80.4
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 4.0e-86 321.6 189 79.4
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 5.3e-86 321.2 189 81.0
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 5.3e-86 321.2 189 80.4
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 6.9e-86 320.9 189 79.4
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 9.0e-86 320.5 191 79.6
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.2e-85 320.1 189 79.4
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 1.5e-85 319.7 189 79.4
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.5e-85 319.7 189 81.0
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 2.0e-85 319.3 189 79.4
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 2.0e-85 319.3 191 80.1
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 3.4e-85 318.5 189 79.4
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 3.4e-85 318.5 189 79.4
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 5.8e-85 317.8 189 79.4
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 5.8e-85 317.8 189 78.3
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 5.8e-85 317.8 189 78.8
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 1.0e-84 317.0 189 79.9
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 1.3e-84 316.6 189 78.8
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.7e-84 316.2 189 78.3
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 1.7e-84 316.2 189 78.3
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 1.7e-84 316.2 190 78.9
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 2.2e-84 315.8 189 79.4
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 2.2e-84 315.8 188 80.3
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 2.9e-84 315.5 190 76.8
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 4.9e-84 314.7 189 78.3
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 6.5e-84 314.3 189 77.8
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 8.4e-84 313.9 189 77.8
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 1.1e-83 313.5 189 79.4
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 1.4e-83 313.2 195 77.9
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 1.9e-83 312.8 189 78.3
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 1.9e-83 312.8 189 77.8
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 2.5e-83 312.4 189 78.3
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 2.5e-83 312.4 189 77.8
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 4.2e-83 311.6 189 77.8
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 5.5e-83 311.2 182 83.0
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 9.3e-83 310.5 189 77.8
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.1e-82 309.3 189 76.2
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 4.6e-82 308.1 189 75.1
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 6.1e-82 307.8 189 76.2
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 7.9e-82 307.4 193 75.6
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 1.3e-81 306.6 189 78.3
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 1.8e-81 306.2 189 76.2
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 1.8e-81 306.2 189 76.2
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 1.8e-81 306.2 189 76.2
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 1.8e-81 306.2 189 75.7
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.8e-81 306.2 215 71.2
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 3.9e-81 305.1 189 75.7
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 3.9e-81 305.1 189 75.7
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 3.9e-81 305.1 189 75.7
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 3.9e-81 305.1 189 76.7
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 8.7e-81 303.9 189 75.7
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 8.7e-81 303.9 188 78.7
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 1.1e-80 303.5 190 77.4
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.5e-80 303.1 189 75.1
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 1.5e-80 303.1 189 76.7
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 4.3e-80 301.6 189 75.7
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 4.3e-80 301.6 189 75.7
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 3.7e-79 298.5 190 75.8
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 8.2e-79 297.4 189 73.5
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.2e-77 293.5 190 71.6
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 1.5e-77 293.1 189 73.5
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 2.6e-77 292.4 189 72.5
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 2.6e-77 292.4 189 72.5
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 5.9e-77 291.2 189 73.0
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 5.9e-77 291.2 189 73.0
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 5.9e-77 291.2 189 73.0
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 7.7e-77 290.8 189 72.5
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 4.2e-75 285.0 209 68.9
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 7.2e-75 284.3 169 78.7
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 2.7e-74 282.3 187 70.6
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 3.0e-73 278.9 192 70.8
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 2.5e-72 275.8 189 73.0
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.2e-66 256.9 194 64.9
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 1.0e-65 253.8 178 69.1
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 3.1e-62 242.3 166 69.9
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 1.2e-61 240.4 194 59.8
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 1.5e-61 240.0 194 61.9
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 7.7e-61 237.7 193 58.5
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.7e-60 236.5 155 74.8
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 1.9e-59 233.0 152 71.7
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 5.5e-59 231.5 134 82.1
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 4.7e-58 228.4 133 82.0
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 2.2e-55 219.5 195 55.4
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 2.5e-51 206.1 193 54.4
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 7.2e-51 204.5 133 70.7
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 4.0e-41 172.2 181 53.0
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 2.0e-32 143.3 169 47.9
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 1.3e-31 140.6 159 47.8
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 2.8e-31 139.4 137 48.9
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 4.6e-29 132.1 102 61.8
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 5.0e-28 128.6 201 39.3


User provided reference genes

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