Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-103 377.1 181 100.0
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 8.5e-86 320.5 196 83.2
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 1.1e-72 276.9 154 87.7
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-70 269.2 154 84.4
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 6.5e-70 267.7 173 80.3
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.9e-69 266.2 196 70.4
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 1.9e-69 266.2 155 83.9
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 5.5e-69 264.6 154 83.1
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 7.2e-69 264.2 155 83.9
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 7.2e-69 264.2 155 83.9
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 7.2e-69 264.2 155 83.9
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 1.6e-68 263.1 155 83.2
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 2.1e-68 262.7 155 83.2
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 3.6e-68 261.9 155 82.6
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 4.7e-68 261.5 155 82.6
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 1.0e-67 260.4 155 83.2
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 1.8e-67 259.6 155 82.6
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.9e-67 258.5 155 81.9
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 5.2e-67 258.1 155 82.6
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 8.8e-67 257.3 155 81.3
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 8.8e-67 257.3 155 81.3
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 8.8e-67 257.3 155 81.9
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 1.5e-66 256.5 155 81.9
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 2.0e-66 256.1 155 81.9
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 4.4e-66 255.0 155 81.9
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 5.7e-66 254.6 155 81.3
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 5.7e-66 254.6 155 81.3
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 4.8e-65 251.5 155 80.6
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 4.8e-65 251.5 155 80.6
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 4.8e-65 251.5 155 80.6
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 4.8e-65 251.5 155 80.6
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 4.8e-65 251.5 155 80.6
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 1.1e-64 250.4 155 80.6
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 1.1e-64 250.4 155 80.6
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 1.8e-64 249.6 155 80.0
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 4.1e-64 248.4 155 81.3
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 5.3e-64 248.1 155 80.0
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.9e-63 244.6 148 81.8
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 1.0e-62 243.8 145 82.8
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 1.5e-61 240.0 155 77.4
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 1.5e-61 240.0 154 77.9
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-60 235.3 141 85.1
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 8.8e-59 230.7 134 86.6
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 2.0e-58 229.6 155 74.8
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 2.0e-58 229.6 155 74.8
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 9.7e-58 227.3 130 87.7
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 1.3e-57 226.9 155 74.2
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-57 226.1 146 80.1
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 3.7e-57 225.3 155 74.8
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 4.8e-57 224.9 138 81.2
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 4.8e-57 224.9 134 83.6
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 1.1e-56 223.8 134 83.6
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-56 222.6 132 84.8
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 5.3e-56 221.5 134 82.8
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 3.5e-55 218.8 134 82.8
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 4.5e-55 218.4 141 78.7
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 5.9e-55 218.0 130 84.6
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 1.3e-54 216.9 134 82.1
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 1.3e-54 216.9 134 82.1
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 1.3e-54 216.9 134 81.3
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 1.7e-54 216.5 134 81.3
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-54 215.7 154 70.8
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 3.8e-54 215.3 134 81.3
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 3.8e-54 215.3 134 81.3
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 3.8e-54 215.3 134 80.6
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 3.8e-54 215.3 132 81.8
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 1.1e-53 213.8 155 70.3
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.5e-53 212.6 134 80.6
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.5e-53 212.6 134 80.6
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-52 210.3 143 74.8
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 6.1e-52 208.0 134 79.1
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-51 206.8 132 80.3
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 3.0e-51 205.7 133 77.4
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 1.5e-50 203.4 133 77.4
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-49 200.3 135 78.5
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 1.4e-48 196.8 133 75.9
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-48 196.1 96 95.8
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 1.9e-45 186.4 139 70.5
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-45 186.4 115 82.6
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 2.5e-45 186.0 101 86.1
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.5e-45 184.9 101 85.1
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 4.7e-44 181.8 155 63.9
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-40 169.9 103 84.5
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-40 169.1 102 83.3
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-40 169.1 102 83.3
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.1e-40 168.7 148 62.2
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-40 168.3 103 83.5
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 7.0e-40 167.9 103 82.5
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 1.6e-39 166.8 131 69.5
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 1.6e-39 166.8 134 66.4
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 5.9e-39 164.9 105 81.0
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 5.9e-39 164.9 105 81.0
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.9e-39 164.9 102 77.5
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.0e-38 164.1 100 79.0
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 1.5e-37 160.2 130 66.9
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 9.5e-37 157.5 99 79.8
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-36 157.1 111 73.0
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.0e-35 154.1 99 79.8
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 1.3e-33 147.1 151 57.0
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-31 139.8 153 54.2
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-31 139.8 153 54.2
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.0e-31 139.8 143 52.4
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 3.5e-31 139.0 86 76.7
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 6.0e-31 138.3 93 76.3
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 3.9e-30 135.6 68 88.2
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-29 134.0 103 72.8
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 7.3e-29 131.3 93 73.1
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 7.5e-26 121.3 155 49.7
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 6.4e-25 118.2 138 52.2
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.1e-24 117.5 118 50.0
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 1.4e-24 117.1 86 73.3
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 2.4e-24 116.3 155 49.0
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 9.2e-24 114.4 123 47.2
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-23 113.6 132 50.0
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 1.7e-22 110.2 57 86.0
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 3.0e-22 109.4 61 86.9
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 3.9e-22 109.0 60 90.0
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 5.1e-22 108.6 67 79.1
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-21 106.3 78 71.8
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 3.1e-19 99.4 61 83.6
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 5.2e-19 98.6 78 69.2
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 5.8e-18 95.1 51 84.3
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 5.8e-18 95.1 73 69.9
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 7.5e-18 94.7 63 77.8
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 2.2e-17 93.2 65 75.4
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-17 92.4 62 75.8
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 6.4e-17 91.7 63 76.2
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 6.4e-17 91.7 63 76.2
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 4.1e-16 89.0 63 74.6
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-16 89.0 63 73.0
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 3.5e-15 85.9 73 67.1
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 5.1e-14 82.0 69 65.2
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 9.6e-13 77.8 117 44.4
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-12 76.3 99 46.5
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 2.6e-10 69.7 53 67.9
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 2.6e-10 69.7 108 41.7
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-10 68.2 50 64.0
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-10 68.2 50 64.0
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-09 66.6 42 76.2
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-09 66.6 48 68.8
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 2.9e-09 66.2 48 70.8
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 2.1e-07 60.1 52 59.6
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 6.0e-07 58.5 43 60.5


User provided reference genes

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