Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 1.6e-28 128.6 60 100.0
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 2.8e-17 91.3 49 87.8
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 3.6e-17 90.9 49 85.7
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 3.6e-17 90.9 49 85.7
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 1.1e-16 89.4 49 83.7
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 1.8e-16 88.6 49 83.7
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 3.1e-16 87.8 49 83.7
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 3.1e-16 87.8 49 81.6
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 6.8e-16 86.7 49 79.6
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 6.8e-16 86.7 49 79.6
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 6.8e-16 86.7 49 79.6
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 8.9e-16 86.3 49 81.6
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 2.0e-15 85.1 49 77.6
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 3.4e-15 84.3 49 77.6
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 3.4e-15 84.3 49 79.6
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 3.4e-15 84.3 49 79.6
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 4.4e-15 84.0 49 77.6
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 4.4e-15 84.0 49 79.6
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 5.8e-15 83.6 49 75.5
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 9.8e-15 82.8 49 77.6
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 1.3e-14 82.4 49 77.6
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 1.7e-14 82.0 49 77.6
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.7e-14 82.0 49 77.6
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 1.7e-14 82.0 45 82.2
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.9e-14 81.3 49 75.5
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.9e-14 81.3 49 75.5
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 2.9e-14 81.3 49 77.6
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 2.9e-14 81.3 49 75.5
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 2.9e-14 81.3 49 75.5
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 2.9e-14 81.3 49 75.5
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 3.7e-14 80.9 47 78.7
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 3.7e-14 80.9 49 75.5
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 3.7e-14 80.9 49 75.5
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 3.7e-14 80.9 49 75.5
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 4.9e-14 80.5 49 75.5
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 4.9e-14 80.5 49 75.5
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 8.3e-14 79.7 49 73.5
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 8.3e-14 79.7 49 73.5
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 8.3e-14 79.7 49 73.5
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 8.3e-14 79.7 49 73.5
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.3e-14 79.7 49 75.5
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 2.1e-12 75.1 48 72.9
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 2.7e-12 74.7 49 73.5
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 4.6e-12 73.9 48 75.0
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.0e-12 73.6 48 72.9
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 1.3e-11 72.4 49 69.4
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 6.6e-11 70.1 47 68.1
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 6.6e-11 70.1 47 68.1
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 6.6e-11 70.1 38 78.9
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 6.6e-11 70.1 40 75.0
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 4.3e-10 67.4 44 72.7
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 4.4e-07 57.4 48 62.5
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 1.3e-06 55.8 30 76.7


User provided reference genes

Program Settings