Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 1.9e-107 392.5 201 100.0
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 3.1e-65 252.3 199 65.8
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 5.4e-65 251.5 205 66.3
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 7.0e-65 251.1 205 64.4
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 7.0e-65 251.1 191 68.6
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 9.1e-65 250.8 203 65.0
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 1.2e-64 250.4 203 65.0
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 1.2e-64 250.4 205 62.9
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 1.6e-64 250.0 208 63.9
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 1.6e-64 250.0 206 63.1
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 2.0e-64 249.6 207 63.8
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.7e-64 249.2 205 63.9
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 2.7e-64 249.2 205 63.9
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.5e-64 248.8 203 65.0
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 5.9e-64 248.1 206 63.1
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 7.7e-64 247.7 190 67.9
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 1.0e-63 247.3 204 64.7
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.0e-63 247.3 205 63.4
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 1.7e-63 246.5 209 64.1
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.7e-63 246.5 203 65.0
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 2.3e-63 246.1 206 64.1
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 2.9e-63 245.7 188 68.6
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.9e-63 245.7 203 64.5
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.9e-63 245.7 203 64.5
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 3.8e-63 245.4 194 67.5
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 3.8e-63 245.4 203 64.5
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 5.0e-63 245.0 203 63.1
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 5.0e-63 245.0 187 67.9
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 5.0e-63 245.0 203 64.5
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 8.6e-63 244.2 203 63.5
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 1.5e-62 243.4 207 62.8
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 1.5e-62 243.4 205 65.4
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 1.9e-62 243.0 198 65.7
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 2.5e-62 242.7 202 65.8
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 3.3e-62 242.3 207 62.8
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 3.3e-62 242.3 199 63.8
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 5.5e-62 241.5 202 65.3
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 7.2e-62 241.1 202 62.9
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 7.2e-62 241.1 201 63.7
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 1.6e-61 240.0 206 61.2
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 1.6e-61 240.0 197 64.5
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.6e-61 240.0 203 63.1
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 2.1e-61 239.6 189 67.2
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 2.8e-61 239.2 194 65.5
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 2.8e-61 239.2 204 59.3
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 2.8e-61 239.2 205 62.9
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 2.8e-61 239.2 206 62.6
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 3.6e-61 238.8 200 63.5
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 4.7e-61 238.4 188 66.5
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 6.1e-61 238.0 205 60.5
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 6.1e-61 238.0 204 60.3
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 6.1e-61 238.0 204 60.3
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 6.1e-61 238.0 204 60.3
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 6.1e-61 238.0 186 67.7
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 8.0e-61 237.7 204 60.3
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 1.4e-60 236.9 204 59.8
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 1.4e-60 236.9 204 59.8
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 2.3e-60 236.1 190 65.8
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 3.0e-60 235.7 200 61.0
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 4.0e-60 235.3 204 59.8
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 4.0e-60 235.3 204 59.3
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 4.0e-60 235.3 192 66.1
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 5.2e-60 235.0 199 63.8
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 5.2e-60 235.0 197 65.0
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 1.2e-59 233.8 198 61.6
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 1.2e-59 233.8 204 59.3
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 2.0e-59 233.0 184 67.4
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 2.6e-59 232.6 191 66.0
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 2.6e-59 232.6 200 63.0
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 3.4e-59 232.3 194 61.3
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 4.4e-59 231.9 187 64.7
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 5.7e-59 231.5 193 63.2
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 9.8e-59 230.7 197 59.9
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.3e-58 230.3 205 61.0
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.3e-58 230.3 205 61.0
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 2.8e-58 229.2 200 62.5
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 3.7e-58 228.8 189 66.1
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 4.9e-58 228.4 186 65.6
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 8.3e-58 227.6 175 67.4
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 1.4e-57 226.9 203 59.1
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 2.4e-57 226.1 197 58.9
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.1e-57 225.7 224 58.0
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 4.1e-57 225.3 196 58.7
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 5.4e-57 224.9 191 64.9
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 3.5e-56 222.2 195 61.0
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 4.5e-56 221.9 203 59.1
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 7.8e-56 221.1 188 62.2
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 1.3e-55 220.3 233 53.6
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 3.8e-55 218.8 200 59.5
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 3.8e-55 218.8 188 61.2
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 1.5e-54 216.9 160 70.6
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 1.9e-54 216.5 219 54.8
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 3.3e-54 215.7 207 55.1
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 4.3e-54 215.3 208 56.7
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 9.5e-54 214.2 209 56.9
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 2.1e-53 213.0 203 56.7
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 2.3e-52 209.5 190 59.5
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 2.0e-51 206.5 322 41.0
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 3.0e-47 192.6 240 47.9
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 5.0e-47 191.8 163 64.4
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 1.3e-42 177.2 116 77.6
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 7.0e-41 171.4 116 76.7
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 2.7e-40 169.5 155 58.1
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 1.3e-39 167.2 128 66.4
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 1.6e-37 160.2 115 70.4
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 2.8e-37 159.5 118 68.6
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.8e-36 156.8 136 62.5
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 3.1e-36 156.0 108 75.0
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 4.9e-34 148.7 130 60.8
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 2.4e-33 146.4 151 51.7
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.6e-32 143.7 136 56.6
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 1.3e-23 114.0 137 46.7
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 1.7e-23 113.6 148 48.6
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 2.3e-23 113.2 139 43.9
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 1.1e-22 110.9 137 43.8
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 2.8e-21 106.3 149 44.3
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 6.4e-18 95.1 89 56.2
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 1.1e-17 94.4 139 38.1
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 6.0e-16 88.6 187 34.8
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 1.3e-15 87.4 247 30.4
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 2.5e-14 83.2 129 40.3
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 2.3e-07 60.1 38 71.1
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 1.5e-06 57.4 37 67.6
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 3.3e-06 56.2 32 81.2


User provided reference genes

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