Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI37562 Sapria himalayana HOM05D008696 ORTHO05D010514 7.2e-223 776.9 392 100.0
SHI37745 Sapria himalayana HOM05D000533 ORTHO05D002807 2.4e-85 320.1 236 74.2
SHI34935 Sapria himalayana HOM05D000533 ORTHO05D002807 3.3e-79 299.7 238 70.6
SHI35933 Sapria himalayana HOM05D000533 ORTHO05D002807 1.6e-73 280.8 266 62.4
SHI50269 Sapria himalayana HOM05D000533 ORTHO05D002807 8.0e-65 251.9 244 59.8
SHI52701 Sapria himalayana HOM05D000533 ORTHO05D002807 2.0e-63 247.3 229 62.9
SHI46653 Sapria himalayana HOM05D000533 ORTHO05D002807 2.5e-50 203.8 165 67.9
SHI36364 Sapria himalayana HOM05D012027 ORTHO05D010514 6.8e-48 195.7 119 81.5
Ah.10g028480 Amaranthus hybridus HOM05D002965 ORTHO05D010183 2.6e-39 167.2 223 49.8
Nitab4.5_0008578g0070 Nicotiana tabacum HOM05D008696 ORTHO05D002807 2.6e-39 167.2 222 53.6
SGA_v2.0_scaffold255G45330 Striga asiatica HOM05D008696 ORTHO05D002807 3.7e-38 163.3 187 55.6
Peaxi162Scf00489g00025 Petunia axillaris HOM05D008696 ORTHO05D002807 7.8e-36 155.6 203 48.3
SHI35932 Sapria himalayana HOM05D008696 ORTHO05D010514 5.1e-35 152.9 87 88.5
Ca_03778_v3 Cicer arietinum L. HOM05D008696 ORTHO05D002807 5.6e-34 149.4 234 45.7
Nitab4.5_0004100g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.8e-32 144.4 247 44.1
LjContig00315g0001623 Lotus japonicus HOM05D008696 ORTHO05D002807 9.9e-31 138.7 201 47.8
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 6.4e-30 136.0 178 50.0
Nitab4.5_0000886g0240 Nicotiana tabacum HOM05D008696 ORTHO05D010514 2.3e-27 127.5 182 47.3
ATMG01275 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 4.2e-21 106.7 125 57.6
CAN.G1673.5 Capsicum annuum HOM05D000533 ORTHO05D002807 5.4e-21 106.3 119 58.0
HanXRQChr08g0236071 Helianthus annuus HOM05D000533 ORTHO05D002807 5.4e-21 106.3 119 58.0
HanXRQMTg0579311 Helianthus annuus HOM05D000533 ORTHO05D002807 5.4e-21 106.3 119 58.0
Hma1.2p1_1191F.1_g265460 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 5.4e-21 106.3 119 58.0
Solyc00g094530.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 5.4e-21 106.3 119 58.0
unitig_87.g27987 Utricularia gibba HOM05D000533 ORTHO05D002807 5.4e-21 106.3 119 58.0
Nitab4.5_0011987g0010 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.7e-20 104.0 147 50.3
TPR.G74 Trifolium pratense HOM05D000533 ORTHO05D002807 2.7e-20 104.0 126 56.3
Gorai.001G164200 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.7e-19 101.3 119 56.3
Solyc00g094520.1 Solanum lycopersicum HOM05D008696 ORTHO05D010514 2.3e-19 100.9 51 94.1
PGSC0003DMG400005437 Solanum tuberosum HOM05D008696 ORTHO05D010514 2.3e-19 100.9 51 94.1
arahy.Tifrunner.gnm1.ann1.AT0FGT Arachis hypogaea HOM05D008696 ORTHO05D010514 6.6e-19 99.4 51 92.2
arahy.Tifrunner.gnm1.ann1.D6INMV Arachis hypogaea HOM05D008696 ORTHO05D010514 6.6e-19 99.4 51 92.2
arahy.Tifrunner.gnm1.ann1.FXV2QT Arachis hypogaea HOM05D008696 ORTHO05D010514 6.6e-19 99.4 51 92.2
arahy.Tifrunner.gnm1.ann1.P4RH3S Arachis hypogaea HOM05D008696 ORTHO05D010514 6.6e-19 99.4 51 92.2
Nn1g10032 Nelumbo nucifera HOM05D008696 ORTHO05D010514 6.6e-19 99.4 51 92.2
Nn1g10035 Nelumbo nucifera HOM05D008696 ORTHO05D010514 6.6e-19 99.4 51 92.2
Nitab4.5_0004300g0140 Nicotiana tabacum HOM05D000533 ORTHO05D002807 8.7e-19 99.0 149 48.3
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 1.1e-18 98.6 118 55.9
CAN.G1.14 Capsicum annuum HOM05D000533 ORTHO05D002807 1.5e-18 98.2 119 54.6
SEGI_40319 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 1.5e-18 98.2 132 49.2
TPR.G36008 Trifolium pratense HOM05D008696 ORTHO05D010514 1.5e-18 98.2 52 90.4
Lsat_1_v5_gn_5_16440 Lactuca sativa HOM05D008696 ORTHO05D010514 4.3e-18 96.7 51 90.2
arahy.Tifrunner.gnm1.ann1.M5G7Z1 Arachis hypogaea HOM05D008696 ORTHO05D010514 7.3e-18 95.9 50 90.0
Sp3g25810 Schrenkiella parvula HOM05D008696 ORTHO05D010514 9.6e-18 95.5 49 91.8
PGSC0003DMG400040498 Solanum tuberosum HOM05D002965 ORTHO05D010514 1.6e-17 94.7 48 93.8
arahy.Tifrunner.gnm1.ann1.QR678R Arachis hypogaea HOM05D008696 ORTHO05D010514 3.6e-17 93.6 49 91.8
arahy.Tifrunner.gnm1.ann1.Z6EYTT Arachis hypogaea HOM05D008696 ORTHO05D010514 6.2e-17 92.8 49 89.8
Nitab4.5_0000031g0220 Nicotiana tabacum HOM05D000533 ORTHO05D002807 8.1e-17 92.4 141 47.5
Sopen05g012710 Solanum pennellii HOM05D008696 ORTHO05D010514 3.1e-16 90.5 48 89.6
CDE02G0273 Ceratophyllum demersum HOM05D000533 ORTHO05D002807 4.0e-16 90.1 54 87.0
Nitab4.5_0000338g0180 Nicotiana tabacum HOM05D000533 ORTHO05D002807 6.9e-16 89.4 125 49.6
SalBow1G1296 Salvia bowleyana HOM05D000533 ORTHO05D002807 9.0e-16 89.0 48 97.9
SalBow1G1594 Salvia bowleyana HOM05D000533 ORTHO05D002807 9.0e-16 89.0 48 97.9
Sc12g0004050 Simmondsia chinensis HOM05D000533 ORTHO05D002807 9.0e-16 89.0 48 97.9
Gohir.D04G096532 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.6e-15 87.4 48 95.8
SabraMtG0003500 Salix brachista HOM05D000533 ORTHO05D002807 7.6e-15 85.9 128 47.7
Nitab4.5_0000844g0030 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.3e-14 85.1 111 53.2
Nitab4.5_0000307g0370 Nicotiana tabacum HOM05D008696 ORTHO05D010514 6.4e-14 82.8 49 81.6
Nitab4.5_0007237g0040 Nicotiana tabacum HOM05D008696 ORTHO05D010514 1.1e-13 82.0 50 82.0
COL.COLO4_04416 Corchorus olitorius HOM05D000533 ORTHO05D002807 3.2e-13 80.5 169 40.2
SEGI_30332 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 9.3e-13 79.0 129 44.2
Nitab4.5_0000307g0290 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.6e-12 78.2 140 45.0
BraSC48t46261Z Brassica rapa HOM05D000533 ORTHO05D002807 3.5e-12 77.0 105 50.5
BNapus_Darmor_BZH_scaffold_234p00330 Brassica napus HOM05D000533 ORTHO05D002807 4.6e-12 76.6 106 50.0
BolSC28t60336H Brassica oleracea HOM05D000533 ORTHO05D002807 4.6e-12 76.6 106 50.0
BolSC28t60400H Brassica oleracea HOM05D000533 ORTHO05D002807 4.6e-12 76.6 106 50.0
BraSC159t45722Z Brassica rapa HOM05D000533 ORTHO05D002807 4.6e-12 76.6 106 50.0
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 4.6e-12 76.6 125 44.0
Gorai.013G212700 Gossypium raimondii HOM05D000533 ORTHO05D002807 7.9e-12 75.9 107 48.6
Nitab4.5_0001796g0260 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.3e-11 74.3 125 44.8
BraSC77t46641Z Brassica rapa HOM05D000533 ORTHO05D002807 3.9e-11 73.6 104 49.0
CAN.G579.3 Capsicum annuum HOM05D000533 ORTHO05D002807 5.1e-11 73.2 47 78.7
AT2G07785 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 6.2e-09 66.2 95 47.4
CARHR287220 Cardamine hirsuta HOM05D000533 ORTHO05D002807 6.2e-09 66.2 95 47.4
Sp3g25800 Schrenkiella parvula HOM05D000533 ORTHO05D002807 6.2e-09 66.2 95 47.4
Sed0014600 Sechium edule HOM05D000533 ORTHO05D002807 6.2e-09 66.2 95 47.4
Peaxi162Scf01556g00006 Petunia axillaris HOM05D000533 ORTHO05D002807 8.1e-09 65.9 78 53.8
Lsat_1_v5_gn_5_60661 Lactuca sativa HOM05D008696 ORTHO05D010514 1.4e-08 65.1 50 62.0
Nitab4.5_0000172g0780 Nicotiana tabacum HOM05D008696 ORTHO05D010514 1.8e-08 64.7 40 80.0
Nn1g09945 Nelumbo nucifera HOM05D000533 ORTHO05D002807 2.4e-08 64.3 95 46.3
Nn1g10033 Nelumbo nucifera HOM05D000533 ORTHO05D002807 2.4e-08 64.3 95 46.3
Nn1g10159 Nelumbo nucifera HOM05D000533 ORTHO05D002807 2.4e-08 64.3 95 46.3
Nn1g10187 Nelumbo nucifera HOM05D000533 ORTHO05D002807 2.4e-08 64.3 95 46.3
PGR028G0008 Punica granatum HOM05D000533 ORTHO05D002807 2.4e-08 64.3 95 46.3
Nn1g09944 Nelumbo nucifera HOM05D008696 ORTHO05D010514 3.1e-08 63.9 37 81.1
Nn1g10158 Nelumbo nucifera HOM05D008696 ORTHO05D010514 3.1e-08 63.9 37 81.1
Nn1g10186 Nelumbo nucifera HOM05D008696 ORTHO05D010514 3.1e-08 63.9 37 81.1
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 5.3e-08 63.2 31 96.8
SHI36464 Sapria himalayana HOM05D000533 ORTHO05D002807 6.9e-08 62.8 65 53.8
SEGI_03033 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 6.9e-08 62.8 35 91.4
TPR.G38982 Trifolium pratense HOM05D008696 ORTHO05D010514 6.9e-08 62.8 48 68.8
GSVIVG01006663001 Vitis vinifera HOM05D000533 ORTHO05D002807 6.9e-08 62.8 95 45.3
SHI36694 Sapria himalayana HOM05D008696 ORTHO05D010514 9.0e-08 62.4 32 90.6
Haze_27295 Corylus avellana HOM05D000533 ORTHO05D002807 1.2e-07 62.0 77 42.9
RcHm_v2.0_Chr6g0256751 Rosa chinensis HOM05D000533 ORTHO05D002807 1.2e-07 62.0 95 45.3
RcHm_v2.0_MTg0498831 Rosa chinensis HOM05D000533 ORTHO05D002807 1.2e-07 62.0 95 45.3
SHI26814 Sapria himalayana HOM05D000533 ORTHO05D002807 1.2e-07 62.0 95 45.3
Lalb_Chr00c21g0405731 Lupinus albus HOM05D000533 ORTHO05D002807 2.0e-07 61.2 95 45.3
Lalb_Chr00c24g0407091 Lupinus albus HOM05D000533 ORTHO05D002807 2.0e-07 61.2 95 45.3
Nitab4.5_0001607g0120 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.4e-07 60.5 53 69.8
PSO541G4958 Papaver somniferum HOM05D000533 ORTHO05D002807 3.4e-07 60.5 129 37.2
Lsat_1_v5_gn_0_34861 Lactuca sativa HOM05D008696 ORTHO05D010514 2.9e-06 57.4 30 86.7
SHI42029 Sapria himalayana HOM05D000533 ORTHO05D002807 3.8e-06 57.0 95 43.2


User provided reference genes

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