Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.3e-122 442.2 218 100.0
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-110 403.3 217 93.1
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 2.5e-108 395.6 218 90.8
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-101 372.9 222 86.0
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 4.4e-89 331.6 195 85.1
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-88 329.7 166 95.8
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 7.1e-79 297.7 182 83.0
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 7.8e-70 267.7 193 74.1
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 4.9e-56 221.9 190 64.2
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.9e-55 219.9 187 63.6
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.4e-55 219.5 187 63.6
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 7.1e-55 218.0 187 63.6
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 3.5e-54 215.7 113 92.9
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 1.5e-52 210.3 111 95.5
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 3.4e-49 199.1 111 91.0
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 5.8e-49 198.4 111 88.3
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 1.7e-48 196.8 192 58.9
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 4.2e-47 192.2 114 83.3
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 9.3e-47 191.0 111 88.3
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 4.6e-46 188.7 100 90.0
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 2.3e-45 186.4 100 89.0
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 2.8e-43 179.5 105 86.7
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 2.5e-39 166.4 81 96.3
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 3.6e-38 162.5 156 57.7
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 6.1e-38 161.8 81 93.8
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 6.1e-38 161.8 81 93.8
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 7.9e-38 161.4 82 91.5
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 7.9e-38 161.4 82 91.5
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.0e-37 161.0 82 92.7
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.3e-37 160.6 79 94.9
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.3e-37 159.8 100 81.0
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 2.3e-37 159.8 81 92.6
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 3.9e-37 159.1 81 91.4
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 3.9e-37 159.1 81 91.4
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 3.9e-37 159.1 81 92.6
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 5.1e-37 158.7 89 85.4
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 5.1e-37 158.7 81 91.4
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 5.1e-37 158.7 81 91.4
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 5.1e-37 158.7 81 91.4
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-36 157.1 81 91.4
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 1.5e-36 157.1 81 91.4
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.5e-36 157.1 81 91.4
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 1.5e-36 157.1 81 91.4
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.5e-36 157.1 81 91.4
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.5e-36 157.1 81 91.4
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.5e-36 157.1 81 91.4
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.5e-36 157.1 89 84.3
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.9e-36 156.8 81 91.4
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 3.3e-36 156.0 117 70.9
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 7.4e-36 154.8 81 90.1
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 1.6e-35 153.7 80 88.8
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 2.8e-35 152.9 79 89.9
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 2.8e-35 152.9 95 84.2
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 8.2e-35 151.4 81 87.7
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 5.3e-34 148.7 108 71.3
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.3e-32 144.1 73 93.2
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 6.5e-32 141.7 95 76.8
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.1e-31 141.0 100 72.0
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 3.2e-31 139.4 70 91.4
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 9.4e-31 137.9 72 90.3
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 9.4e-31 137.9 72 90.3
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-30 137.5 179 49.2
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 1.6e-30 137.1 81 80.2
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 8.8e-29 131.3 72 88.9
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 1.3e-27 127.5 71 83.1
Nn2g15526 Nelumbo nucifera HOM05D009845 ORTHO05D006814 6.9e-26 121.7 66 92.4
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.2e-24 116.7 100 61.0
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 4.2e-23 112.5 76 75.0
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 2.1e-22 110.2 81 69.1
RcHm_v2.0_Chr6g0257981 Rosa chinensis HOM05D022571 ORTHO05D010624 4.7e-22 109.0 84 67.9
Nitab4.5_0000062g0140 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.3e-21 106.7 58 89.7
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.9e-21 105.9 81 65.4
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-20 104.0 56 91.1
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-20 104.0 64 73.4
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 4.8e-19 99.0 93 54.8
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 8.2e-19 98.2 93 55.9
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-18 97.8 55 85.5
TPR.G11219 Trifolium pratense HOM05D009845 ORTHO05D010624 1.4e-18 97.4 93 53.8
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 1.4e-18 97.4 92 55.4
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.8e-18 97.1 80 53.8
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 3.1e-18 96.3 93 53.8
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.1e-18 94.7 85 58.8
arahy.Tifrunner.gnm1.ann1.3S39J7 Arachis hypogaea HOM05D009845 ORTHO05D010624 1.0e-16 91.3 93 49.5
arahy.Tifrunner.gnm1.ann1.L3Y80W Arachis hypogaea HOM05D009845 ORTHO05D010624 1.0e-16 91.3 93 49.5
arahy.Tifrunner.gnm1.ann1.XL5EFA Arachis hypogaea HOM05D009845 ORTHO05D010624 1.0e-16 91.3 93 49.5
arahy.Tifrunner.gnm1.ann1.XS77WZ Arachis hypogaea HOM05D009845 ORTHO05D010624 1.0e-16 91.3 93 49.5
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 1.0e-16 91.3 65 70.8
arahy.Tifrunner.gnm1.ann1.W8CL8V Arachis hypogaea HOM05D009845 ORTHO05D010624 2.2e-16 90.1 93 48.4
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 2.1e-14 83.6 49 87.8
HanXRQChr01g0004171 Helianthus annuus HOM05D029082 ORTHO05D010624 4.7e-14 82.4 54 70.4
HanXRQChr16g0506281 Helianthus annuus HOM05D029082 ORTHO05D010624 6.1e-14 82.0 54 68.5
Lalb_Chr08g0236141 Lupinus albus HOM05D009845 ORTHO05D010624 8.0e-14 81.6 85 48.2
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 8.0e-14 81.6 85 48.2
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 8.0e-14 81.6 93 47.3
Lsat_1_v5_gn_1_129701 Lactuca sativa HOM05D009845 ORTHO05D010624 1.0e-13 81.3 53 67.9
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.4e-13 80.9 44 90.9
ECA248G2152 Erigeron canadensis HOM05D029082 ORTHO05D010624 1.4e-13 80.9 54 66.7
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 1.8e-13 80.5 41 95.1
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 1.8e-13 80.5 41 95.1
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 3.0e-13 79.7 47 83.0
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 6.7e-13 78.6 93 44.1
VMungo1309G2800 Vigna mungo HOM05D009845 ORTHO05D010624 1.2e-12 77.8 166 36.1
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.0e-12 77.0 48 81.2
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 2.0e-12 77.0 42 90.5
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 2.0e-12 77.0 61 60.7
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 2.6e-12 76.6 93 44.1
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 5.7e-12 75.5 93 43.0
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.7e-12 74.7 50 80.0
HPP92_004941 Vanilla planifolia HOM05D023446 ORTHO05D025972 1.1e-10 71.2 90 44.4
Carub.0004s2920 Capsella rubella HOM05D011069 ORTHO05D010624 1.8e-10 70.5 54 61.1
SHI33643 Sapria himalayana HOM05D005794 ORTHO05D010624 1.8e-10 70.5 35 85.7
CARHR141830 Cardamine hirsuta HOM05D011069 ORTHO05D010624 3.1e-10 69.7 54 61.1
Sp4g28540 Schrenkiella parvula HOM05D011069 ORTHO05D010624 4.1e-10 69.3 71 53.5
TWI39G0104 Tripterygium wilfordii HOM05D011069 ORTHO05D010624 4.1e-10 69.3 48 66.7
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.2e-09 67.8 40 67.5
Thhalv10001774m.g Eutrema salsugineum HOM05D011069 ORTHO05D010624 3.5e-09 66.2 50 64.0
MELO3C027807.2 Cucumis melo HOM05D039398 ORTHO05D006814 5.9e-09 65.5 37 86.5
MELO3C000713.2 Cucumis melo HOM05D039398 ORTHO05D006814 7.7e-09 65.1 37 83.8
FvH4_2g07040 Fragaria vesca HOM05D022571 ORTHO05D029580 1.3e-08 64.3 62 50.0
FAN15G1463 Fragaria x ananassa HOM05D022571 ORTHO05D029580 1.3e-08 64.3 62 50.0
FAN27G0090 Fragaria x ananassa HOM05D022571 ORTHO05D029580 1.3e-08 64.3 62 50.0
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 1.7e-08 63.9 42 81.0
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 2.2e-08 63.5 30 90.0
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 2.9e-08 63.2 30 90.0
AL4G45920 Arabidopsis lyrata HOM05D011069 ORTHO05D010624 5.0e-08 62.4 55 52.7
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 5.0e-08 62.4 74 41.9
FAN24G3155 Fragaria x ananassa HOM05D022571 ORTHO05D029580 6.5e-08 62.0 62 48.4
AT2G46505 Arabidopsis thaliana HOM05D011069 ORTHO05D010624 1.1e-07 61.2 55 52.7
DCAR_022854 Daucus carota HOM05D000144 ORTHO05D010624 1.5e-07 60.8 44 65.9
Ah.01g013130 Amaranthus hybridus HOM05D007797 ORTHO05D009741 7.2e-07 58.5 59 49.2
BcaNung05601 Brassica carinata HOM05D011069 ORTHO05D010624 9.4e-07 58.2 54 50.0
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 9.4e-07 58.2 44 61.4
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 9.4e-07 58.2 31 83.9
Aa31sc13G60 Aethionema arabicum HOM05D011069 ORTHO05D010624 1.6e-06 57.4 51 56.9
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 2.1e-06 57.0 41 68.3
BcaC01g05061 Brassica carinata HOM05D011069 ORTHO05D010624 2.1e-06 57.0 54 48.1
C03p30640 Brassica napus HOM05D011069 ORTHO05D010624 2.1e-06 57.0 54 48.1
BolC3t15414H Brassica oleracea HOM05D011069 ORTHO05D010624 2.1e-06 57.0 54 48.1
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.7e-06 56.6 31 90.3
BcaB01g03211 Brassica carinata HOM05D011069 ORTHO05D010624 3.6e-06 56.2 54 46.3
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 4.7e-06 55.8 32 78.1
BcaC02g12523 Brassica carinata HOM05D011069 ORTHO05D010624 6.1e-06 55.5 54 46.3
A05p01300 Brassica napus HOM05D011069 ORTHO05D010624 6.1e-06 55.5 54 46.3
BraA05t19128Z Brassica rapa HOM05D011069 ORTHO05D010624 6.1e-06 55.5 54 46.3
A03p25700 Brassica napus HOM05D011069 ORTHO05D010624 8.0e-06 55.1 54 46.3
BraA03t11784Z Brassica rapa HOM05D011069 ORTHO05D010624 8.0e-06 55.1 54 46.3


User provided reference genes

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