Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 9.1e-117 423.7 232 100.0
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 3.1e-16 89.7 58 74.1
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 3.6e-12 76.3 51 68.6
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 3.0e-11 73.2 55 61.8
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 3.0e-11 73.2 51 64.7
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 3.0e-11 73.2 49 65.3
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 3.0e-11 73.2 55 61.8
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 3.9e-11 72.8 55 58.2
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 5.1e-11 72.4 49 67.3
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 5.1e-11 72.4 47 68.1
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 6.7e-11 72.0 51 62.7
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 6.7e-11 72.0 56 57.1
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 6.7e-11 72.0 52 63.5
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 6.7e-11 72.0 59 61.0
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 6.7e-11 72.0 55 60.0
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 6.7e-11 72.0 46 67.4
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 8.8e-11 71.6 59 61.0
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 8.8e-11 71.6 59 52.5
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 8.8e-11 71.6 52 65.4
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 8.8e-11 71.6 59 52.5
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 1.1e-10 71.2 54 61.1
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 1.1e-10 71.2 43 74.4
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 1.1e-10 71.2 48 64.6
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 1.5e-10 70.9 52 61.5
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 1.5e-10 70.9 51 66.7
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 1.5e-10 70.9 51 62.7
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.5e-10 70.9 61 55.7
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 2.0e-10 70.5 51 60.8
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 2.0e-10 70.5 52 61.5
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 2.0e-10 70.5 43 72.1
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 2.0e-10 70.5 49 65.3
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 2.0e-10 70.5 55 56.4
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 2.0e-10 70.5 56 62.5
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 2.6e-10 70.1 56 55.4
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 2.6e-10 70.1 63 50.8
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 2.6e-10 70.1 59 50.8
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 2.6e-10 70.1 52 63.5
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 2.6e-10 70.1 52 63.5
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 2.6e-10 70.1 62 54.8
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 2.6e-10 70.1 49 63.3
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 3.3e-10 69.7 49 63.3
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 3.3e-10 69.7 49 61.2
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 3.3e-10 69.7 49 61.2
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 3.3e-10 69.7 49 61.2
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 3.3e-10 69.7 62 51.6
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 3.3e-10 69.7 59 52.5
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 3.3e-10 69.7 59 52.5
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 4.4e-10 69.3 50 60.0
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 4.4e-10 69.3 62 56.5
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 4.4e-10 69.3 43 69.8
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 4.4e-10 69.3 51 60.8
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 4.4e-10 69.3 49 61.2
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 4.4e-10 69.3 43 69.8
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 4.4e-10 69.3 51 60.8
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 5.7e-10 68.9 49 61.2
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 5.7e-10 68.9 49 61.2
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 5.7e-10 68.9 49 61.2
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 5.7e-10 68.9 49 61.2
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 5.7e-10 68.9 49 61.2
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 5.7e-10 68.9 59 50.8
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 5.7e-10 68.9 59 52.5
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 5.7e-10 68.9 51 62.7
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 5.7e-10 68.9 52 61.5
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 5.7e-10 68.9 44 65.9
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 7.4e-10 68.6 48 62.5
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 7.4e-10 68.6 53 54.7
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 7.4e-10 68.6 58 51.7
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 7.4e-10 68.6 59 50.8
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 7.4e-10 68.6 48 60.4
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 7.4e-10 68.6 51 58.8
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 7.4e-10 68.6 60 50.0
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 7.4e-10 68.6 60 50.0
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 7.4e-10 68.6 54 57.4
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 9.7e-10 68.2 43 67.4
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 9.7e-10 68.2 46 67.4
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 9.7e-10 68.2 46 67.4
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 9.7e-10 68.2 51 58.8
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 9.7e-10 68.2 54 57.4
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 9.7e-10 68.2 60 50.0
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 9.7e-10 68.2 62 51.6
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 9.7e-10 68.2 59 50.8
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 9.7e-10 68.2 51 58.8
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 9.7e-10 68.2 54 53.7
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 9.7e-10 68.2 49 57.1
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.3e-09 67.8 61 47.5
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.3e-09 67.8 50 58.0
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.3e-09 67.8 50 58.0
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 1.3e-09 67.8 57 56.1
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.3e-09 67.8 43 69.8
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 1.7e-09 67.4 61 49.2
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 1.7e-09 67.4 48 60.4
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 1.7e-09 67.4 43 67.4
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.7e-09 67.4 49 57.1
SHI29259 Sapria himalayana HOM05D000648 ORTHO05D009534 1.7e-09 67.4 64 57.8
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 1.7e-09 67.4 61 50.8
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 2.2e-09 67.0 48 58.3
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 2.2e-09 67.0 43 65.1
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 2.2e-09 67.0 49 59.2
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 2.2e-09 67.0 63 47.6
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.2e-09 67.0 43 67.4
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.2e-09 67.0 43 67.4
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 2.8e-09 66.6 59 50.8
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 2.8e-09 66.6 43 62.8
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 2.8e-09 66.6 43 67.4
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 2.8e-09 66.6 46 63.0
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 2.8e-09 66.6 43 65.1
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 2.8e-09 66.6 43 65.1
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 2.8e-09 66.6 43 65.1
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 2.8e-09 66.6 51 64.7
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 2.8e-09 66.6 51 56.9
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 2.8e-09 66.6 53 50.9
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 3.7e-09 66.2 59 49.2
SHI27278 Sapria himalayana HOM05D000002 ORTHO05D000001 6.3e-09 65.5 38 78.9
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 8.2e-09 65.1 44 63.6
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 8.2e-09 65.1 44 63.6
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 8.2e-09 65.1 41 68.3
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 8.2e-09 65.1 41 68.3
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 8.2e-09 65.1 41 68.3
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 8.2e-09 65.1 41 68.3
SHI47472 Sapria himalayana HOM05D002876 ORTHO05D007253 8.2e-09 65.1 37 81.1
SHI48570 Sapria himalayana HOM05D002876 ORTHO05D007253 8.2e-09 65.1 37 81.1
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 8.2e-09 65.1 41 68.3
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 1.1e-08 64.7 44 63.6
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 1.1e-08 64.7 44 63.6
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 1.1e-08 64.7 62 48.4
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 1.1e-08 64.7 43 60.5
SHI37732 Sapria himalayana HOM05D000648 ORTHO05D009534 1.1e-08 64.7 30 96.7
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 1.4e-08 64.3 44 68.2
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 1.4e-08 64.3 44 68.2
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 1.4e-08 64.3 44 68.2
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 1.4e-08 64.3 44 68.2
SHI17156 Sapria himalayana HOM05D000648 ORTHO05D009534 1.4e-08 64.3 30 93.3
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 1.4e-08 64.3 44 68.2
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.4e-08 64.3 49 59.2
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.4e-08 64.3 48 58.3
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 1.8e-08 63.9 39 71.8
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 1.8e-08 63.9 43 60.5
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 2.4e-08 63.5 43 60.5
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 2.4e-08 63.5 41 65.9
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 3.1e-08 63.2 43 67.4
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 4.1e-08 62.8 39 69.2
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 4.1e-08 62.8 40 67.5
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 4.1e-08 62.8 51 60.8
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 5.3e-08 62.4 39 66.7
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 5.3e-08 62.4 56 48.2
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 5.3e-08 62.4 39 66.7
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 5.3e-08 62.4 62 46.8
SHI48427 Sapria himalayana HOM05D000648 ORTHO05D000568 5.3e-08 62.4 30 93.3
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 7.0e-08 62.0 56 48.2
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 7.0e-08 62.0 41 61.0
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 7.0e-08 62.0 41 61.0
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 7.0e-08 62.0 46 56.5
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 7.0e-08 62.0 49 55.1
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 9.1e-08 61.6 38 71.1
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.5e-07 60.8 39 64.1
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 2.0e-07 60.5 44 65.9
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 2.0e-07 60.5 37 70.3
SHI16691 Sapria himalayana HOM05D000648 ORTHO05D000062 2.0e-07 60.5 39 69.2
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 2.6e-07 60.1 43 58.1
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 4.5e-07 59.3 38 65.8
SHI50945 Sapria himalayana HOM05D000648 ORTHO05D000568 4.5e-07 59.3 30 86.7
SHI31600 Sapria himalayana HOM05D000107 ORTHO05D000062 5.9e-07 58.9 30 83.3
SHI39213 Sapria himalayana HOM05D000648 ORTHO05D000568 5.9e-07 58.9 62 50.0
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 7.7e-07 58.5 37 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 1.0e-06 58.2 40 60.0
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 1.0e-06 58.2 43 55.8
SHI34147 Sapria himalayana HOM05D007985 ORTHO05D000062 1.0e-06 58.2 38 71.1
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 1.7e-06 57.4 57 52.6
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.7e-06 57.4 37 64.9
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.7e-06 57.4 37 64.9
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.9e-06 56.6 40 60.0
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.9e-06 56.6 28 89.3
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 5.0e-06 55.8 43 62.8
SHI38379 Sapria himalayana HOM05D000049 ORTHO05D370561 5.0e-06 55.8 38 63.2
SHI41322 Sapria himalayana HOM05D000558 ORTHO05D001857 5.0e-06 55.8 38 73.7


User provided reference genes

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