Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI36898 Sapria himalayana HOM05D000115 ORTHO05D005317 2.4e-96 356.3 311 100.0
SHI24462 Sapria himalayana HOM05D000115 ORTHO05D005317 1.2e-10 71.6 39 84.6
COL.COLO4_33710 Corchorus olitorius HOM05D000115 ORTHO05D005317 2.9e-09 67.0 49 61.2
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 8.4e-09 65.5 49 57.1
CiPaw.03G188000 Carya illinoinensis HOM05D000115 ORTHO05D005317 1.4e-08 64.7 48 60.4
Dinv12712 Davidia involucrata HOM05D000115 ORTHO05D005317 1.9e-08 64.3 47 61.7
CSS0031690 Camellia sinensis var. sinensis HOM05D005920 ORTHO05D005317 2.5e-08 63.9 47 57.4
ClCG02G018280 Citrullus lanatus HOM05D000115 ORTHO05D005317 2.5e-08 63.9 49 59.2
Haze_13473 Corylus avellana HOM05D000115 ORTHO05D005317 2.5e-08 63.9 49 59.2
MELO3C014459.2 Cucumis melo HOM05D000115 ORTHO05D005317 2.5e-08 63.9 47 61.7
CsaV3_6G037960 Cucumis sativus L. HOM05D000115 ORTHO05D005317 2.5e-08 63.9 47 61.7
FAN14G2802 Fragaria x ananassa HOM05D000115 ORTHO05D005317 2.5e-08 63.9 49 59.2
FAN09G3340 Fragaria x ananassa HOM05D000115 ORTHO05D005317 4.2e-08 63.2 47 59.6
Os05g0204900 Oryza sativa ssp. japonica HOM05D000115 ORTHO05D005317 4.2e-08 63.2 47 63.8
Zm00001eb283980 Zea mays HOM05D000115 ORTHO05D005317 4.2e-08 63.2 47 61.7
AUR62024011 Chenopodium quinoa HOM05D000115 ORTHO05D005317 7.1e-08 62.4 47 57.4
AUR62041331 Chenopodium quinoa HOM05D000115 ORTHO05D005317 7.1e-08 62.4 47 57.4
FAN14G5116 Fragaria x ananassa HOM05D000115 ORTHO05D005317 7.1e-08 62.4 47 59.6
Ah.01g004800 Amaranthus hybridus HOM05D000115 ORTHO05D005317 9.3e-08 62.0 47 57.4
Ah.01g016030 Amaranthus hybridus HOM05D000115 ORTHO05D005317 9.3e-08 62.0 47 57.4
EL10Ac9g21017 Beta vulgaris HOM05D000115 ORTHO05D005317 9.3e-08 62.0 47 57.4
A05p03220 Brassica napus HOM05D000115 ORTHO05D005317 9.3e-08 62.0 47 59.6
C04p03870 Brassica napus HOM05D000115 ORTHO05D005317 9.3e-08 62.0 47 59.6
BolC4t22023H Brassica oleracea HOM05D000115 ORTHO05D005317 9.3e-08 62.0 47 59.6
BraA05t19312Z Brassica rapa HOM05D000115 ORTHO05D005317 9.3e-08 62.0 47 59.6
FAN05G2006 Fragaria x ananassa HOM05D000115 ORTHO05D005317 9.3e-08 62.0 47 57.4
Oeu013826.2 Olea europaea HOM05D000115 ORTHO05D005317 9.3e-08 62.0 47 55.3
QL08p043628 Quercus lobata HOM05D000115 ORTHO05D005317 9.3e-08 62.0 48 56.2
Pp3c7_11180 Physcomitrium patens HOM05D000115 ORTHO05D005317 1.2e-07 61.6 47 57.4
Lsat_1_v5_gn_3_36161 Lactuca sativa HOM05D000115 ORTHO05D005317 1.6e-07 61.2 46 56.5
Sabra14G0107000 Salix brachista HOM05D000115 ORTHO05D005317 1.6e-07 61.2 47 57.4
vmacro12439 Vaccinium macrocarpon HOM05D005920 ORTHO05D007211 1.6e-07 61.2 47 61.7
Cpa.g.sc50.66 Carica papaya HOM05D000115 ORTHO05D005317 2.1e-07 60.8 48 56.2
CDE06G1396 Ceratophyllum demersum HOM05D000115 ORTHO05D005317 2.1e-07 60.8 47 57.4
ClCG09G022290 Citrullus lanatus HOM05D000115 ORTHO05D005317 2.1e-07 60.8 47 59.6
HanXRQChr17g0541261 Helianthus annuus HOM05D000115 ORTHO05D005317 2.1e-07 60.8 47 55.3
Oeu026480.1 Olea europaea HOM05D000115 ORTHO05D005317 2.1e-07 60.8 47 55.3
Sed0025939 Sechium edule HOM05D000115 ORTHO05D005317 2.1e-07 60.8 47 57.4
TAR626G1968 Trochodendron aralioides HOM05D000115 ORTHO05D005317 2.1e-07 60.8 47 57.4
HPP92_021772 Vanilla planifolia HOM05D000115 ORTHO05D005317 2.1e-07 60.8 48 58.3
Lj1A585G39 Lonicera japonica HOM05D000115 ORTHO05D005317 2.7e-07 60.5 47 53.2
HanXRQChr12g0356211 Helianthus annuus HOM05D005920 ORTHO05D019809 3.5e-07 60.1 48 54.2
Gohir.A01G190800 Gossypium hirsutum HOM05D001271 ORTHO05D007211 4.6e-07 59.7 47 53.2
Nitab4.5_0002737g0050 Nicotiana tabacum HOM05D000115 ORTHO05D005317 4.6e-07 59.7 47 53.2
Cc05_g09190 Coffea canephora HOM05D000115 ORTHO05D005317 6.0e-07 59.3 46 58.7
SGA_v2.0_scaffold9G04898 Striga asiatica HOM05D000115 ORTHO05D005317 6.0e-07 59.3 47 51.1
CDE02G1626 Ceratophyllum demersum HOM05D000115 ORTHO05D005317 1.0e-06 58.5 42 61.9
SalBow7G3865 Salvia bowleyana HOM05D000115 ORTHO05D005317 1.0e-06 58.5 47 53.2
SEGI_20856 Sequoiadendron giganteum HOM05D000115 ORTHO05D005317 1.0e-06 58.5 47 59.6
Rhsim06G0121700 Rhododendron simsii HOM05D000115 ORTHO05D005317 1.3e-06 58.2 47 57.4
HanXRQChr06g0170821 Helianthus annuus HOM05D000115 ORTHO05D005317 1.8e-06 57.8 44 56.8
Gohir.A02G136701 Gossypium hirsutum HOM05D000115 ORTHO05D019809 3.9e-06 56.6 48 45.8
Medtr3g452710 Medicago truncatula HOM05D000115 ORTHO05D005317 3.9e-06 56.6 48 56.2
Oeu032120.1 Olea europaea HOM05D000115 ORTHO05D005317 3.9e-06 56.6 47 53.2
MD09G1156000 Malus domestica HOM05D000115 ORTHO05D005317 6.7e-06 55.8 37 67.6
MD17G1142100 Malus domestica HOM05D000115 ORTHO05D005317 6.7e-06 55.8 37 67.6
Nn3g20994 Nelumbo nucifera HOM05D000115 ORTHO05D005317 6.7e-06 55.8 42 59.5
Lsat_1_v5_gn_8_32001 Lactuca sativa HOM05D000115 ORTHO05D005317 8.7e-06 55.5 46 54.3


User provided reference genes

Program Settings