Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 9.4e-59 229.9 113 100.0
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.1e-30 135.2 154 53.9
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 7.5e-24 114.0 94 66.0
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 5.4e-22 107.8 79 70.9
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 2.7e-21 105.5 82 68.3
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 5.0e-20 101.3 78 73.1
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 3.3e-19 98.6 54 88.9
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.6e-18 95.1 78 69.2
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.8e-17 92.8 115 55.7
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.8e-17 92.8 115 55.7
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.8e-17 92.8 115 55.7
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.8e-17 92.8 115 55.7
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.8e-17 92.8 115 55.7
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 6.8e-17 90.9 115 53.9
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 5.4e-14 81.3 103 54.4
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 4.6e-13 78.2 61 70.5
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 1.3e-12 76.6 37 97.3
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 1.3e-12 76.6 37 97.3
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.3e-12 76.6 37 97.3
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.3e-12 76.6 37 97.3
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
Migut.D01379 Erythranthe guttata HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 1.3e-12 76.6 37 97.3
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 1.3e-12 76.6 37 97.3
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 1.3e-12 76.6 37 97.3
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 1.3e-12 76.6 37 97.3
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 1.7e-12 76.3 43 86.0
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.3e-12 75.9 52 73.1
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 3.0e-12 75.5 36 100.0
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 3.0e-12 75.5 36 100.0
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 3.9e-12 75.1 36 97.2
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 5.0e-12 74.7 40 92.5
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 5.0e-12 74.7 40 92.5
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 5.0e-12 74.7 40 92.5
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 5.0e-12 74.7 40 92.5
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 5.0e-12 74.7 40 92.5
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.0e-12 74.7 45 82.2
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 5.0e-12 74.7 40 92.5
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 5.0e-12 74.7 37 94.6
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 5.0e-12 74.7 40 92.5
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 5.0e-12 74.7 40 92.5
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 5.0e-12 74.7 40 92.5
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 8.6e-12 73.9 37 94.6
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.1e-11 73.6 37 94.6
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.1e-11 73.6 122 42.6
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 1.5e-11 73.2 40 90.0
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 1.5e-11 73.2 40 90.0
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.5e-11 73.2 37 94.6
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.5e-11 73.2 37 94.6
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.5e-11 73.2 37 94.6
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 1.9e-11 72.8 37 89.2
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 2.5e-11 72.4 40 90.0
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 2.5e-11 72.4 37 94.6
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 3.3e-11 72.0 37 91.9
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.3e-11 72.0 37 91.9
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 3.3e-11 72.0 34 97.1
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 4.3e-11 71.6 40 90.0
Nitab4.5_0000017g0110 Nicotiana tabacum HOM05D000963 ORTHO05D005131 4.3e-11 71.6 37 91.9
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 5.6e-11 71.2 40 87.5
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 9.5e-11 70.5 40 87.5
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 9.5e-11 70.5 40 87.5
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.2e-10 70.1 37 86.5
SEGI_13287 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 2.8e-10 68.9 36 88.9
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.6e-10 68.6 40 80.0
Nitab4.5_0006211g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 4.7e-10 68.2 36 88.9
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.7e-10 68.2 37 89.2
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 4.7e-10 68.2 40 87.5
Gohir.A13G086560 Gossypium hirsutum HOM05D000963 ORTHO05D005131 6.2e-10 67.8 37 86.5
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 6.2e-10 67.8 43 79.1
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 6.2e-10 67.8 37 86.5
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 8.1e-10 67.4 37 86.5
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 8.1e-10 67.4 37 91.9
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 1.1e-09 67.0 40 85.0
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 1.1e-09 67.0 105 50.5
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.1e-09 67.0 43 76.7
SEGI_10061 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 1.4e-09 66.6 36 86.1
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 2.3e-09 65.9 37 83.8
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 4.0e-09 65.1 40 82.5
SHI47131 Sapria himalayana HOM05D000963 ORTHO05D005131 4.0e-09 65.1 37 83.8
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 4.0e-09 65.1 37 83.8
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 5.2e-09 64.7 59 61.0
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 5.2e-09 64.7 37 86.5
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 5.2e-09 64.7 40 82.5
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 6.8e-09 64.3 40 80.0
SHI42531 Sapria himalayana HOM05D000963 ORTHO05D005131 8.9e-09 63.9 37 81.1
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.5e-08 63.2 38 84.2
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.5e-08 63.2 37 81.1
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 2.0e-08 62.8 41 70.7
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 2.6e-08 62.4 64 54.7
VMungo1024G0002 Vigna mungo HOM05D000963 ORTHO05D005131 2.6e-08 62.4 46 71.7
Gohir.A12G053150 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.4e-08 62.0 37 81.1
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 3.4e-08 62.0 37 78.4
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 4.4e-08 61.6 40 75.0
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 4.4e-08 61.6 172 34.3
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 5.8e-08 61.2 37 81.1
Gohir.D09G105350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.5e-08 60.8 39 76.9
Potri.007G062061 Populus trichocarpa HOM05D010604 ORTHO05D012476 7.5e-08 60.8 78 48.7
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 9.9e-08 60.5 39 76.9
arahy.Tifrunner.gnm1.ann1.05XESX Arachis hypogaea HOM05D010604 ORTHO05D012476 2.2e-07 59.3 35 80.0
arahy.Tifrunner.gnm1.ann1.0LX666 Arachis hypogaea HOM05D010604 ORTHO05D012476 2.2e-07 59.3 35 80.0
CsaV3_UNG209450 Cucumis sativus L. HOM05D010604 ORTHO05D012476 1.4e-06 56.6 35 77.1
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 1.4e-06 56.6 35 77.1
Lsat_1_v5_gn_5_152921 Lactuca sativa HOM05D010604 ORTHO05D012476 1.4e-06 56.6 35 77.1
RhsimMtG0000800 Rhododendron simsii HOM05D010604 ORTHO05D012476 1.4e-06 56.6 35 77.1
VMungo0329G0006 Vigna mungo HOM05D010604 ORTHO05D012476 1.4e-06 56.6 35 77.1
Gohir.D07G041825 Gossypium hirsutum HOM05D000963 ORTHO05D005131 9.2e-06 53.9 44 56.8
Gorai.001G044400 Gossypium raimondii HOM05D000963 ORTHO05D005131 9.2e-06 53.9 44 56.8


User provided reference genes

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