Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-52 209.5 106 100.0
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.1e-11 73.6 56 58.9
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 1.4e-11 73.2 56 60.7
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.8e-11 72.8 59 55.9
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 3.1e-11 72.0 78 46.2
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 3.1e-11 72.0 59 54.2
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 3.1e-11 72.0 59 50.8
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 3.1e-11 72.0 59 50.8
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 5.2e-11 71.2 56 55.4
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 6.8e-11 70.9 57 52.6
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 6.8e-11 70.9 56 55.4
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 8.9e-11 70.5 56 58.9
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 8.9e-11 70.5 56 58.9
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 8.9e-11 70.5 57 50.9
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 8.9e-11 70.5 56 53.6
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 8.9e-11 70.5 56 55.4
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.2e-10 70.1 59 49.2
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 2.0e-10 69.3 56 51.8
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 2.0e-10 69.3 56 51.8
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 2.0e-10 69.3 56 51.8
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.6e-10 68.9 56 57.1
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 2.6e-10 68.9 56 51.8
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 2.6e-10 68.9 56 53.6
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 3.4e-10 68.6 53 58.5
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.4e-10 68.6 56 51.8
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 3.4e-10 68.6 56 51.8
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 3.4e-10 68.6 56 53.6
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 4.4e-10 68.2 56 51.8
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 4.4e-10 68.2 56 53.6
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 4.4e-10 68.2 56 51.8
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 5.8e-10 67.8 56 53.6
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 5.8e-10 67.8 90 44.4
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 7.6e-10 67.4 56 53.6
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 7.6e-10 67.4 56 51.8
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 9.9e-10 67.0 56 51.8
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 1.3e-09 66.6 56 51.8
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.7e-09 66.2 56 53.6
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 1.7e-09 66.2 56 51.8
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.7e-09 66.2 57 50.9
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 2.2e-09 65.9 49 57.1
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.9e-09 65.5 56 48.2
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 2.9e-09 65.5 57 47.4
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 3.8e-09 65.1 56 48.2
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 3.8e-09 65.1 56 55.4
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 3.8e-09 65.1 56 48.2
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 4.9e-09 64.7 56 50.0
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 6.4e-09 64.3 57 50.9
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.4e-09 64.3 56 48.2
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.4e-09 64.3 56 48.2
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 8.4e-09 63.9 57 50.9
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 8.4e-09 63.9 57 50.9
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 8.4e-09 63.9 56 48.2
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.1e-08 63.5 59 50.8
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.4e-08 63.2 63 47.6
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.4e-08 63.2 56 46.4
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.9e-08 62.8 56 48.2
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.9e-08 62.8 57 49.1
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.9e-08 62.8 56 46.4
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.9e-08 62.8 77 41.6
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 2.4e-08 62.4 56 48.2
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 2.4e-08 62.4 56 53.6
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 2.4e-08 62.4 57 49.1
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 2.4e-08 62.4 57 47.4
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 2.4e-08 62.4 56 53.6
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 2.4e-08 62.4 56 55.4
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 3.2e-08 62.0 56 53.6
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 3.2e-08 62.0 56 42.9
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 4.1e-08 61.6 56 50.0
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 4.1e-08 61.6 56 48.2
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 4.1e-08 61.6 56 50.0
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 4.1e-08 61.6 56 50.0
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 5.4e-08 61.2 56 51.8
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 5.4e-08 61.2 56 48.2
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 5.4e-08 61.2 56 48.2
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 5.4e-08 61.2 56 48.2
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 5.4e-08 61.2 56 50.0
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 5.4e-08 61.2 56 55.4
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 5.4e-08 61.2 56 50.0
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 5.4e-08 61.2 53 56.6
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 9.2e-08 60.5 66 45.5
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 9.2e-08 60.5 59 52.5
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 1.2e-07 60.1 59 50.8
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.6e-07 59.7 56 46.4
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.6e-07 59.7 57 47.4
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 3.5e-07 58.5 56 50.0
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 7.8e-07 57.4 56 51.8
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 7.8e-07 57.4 56 44.6
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.0e-06 57.0 68 42.6
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 1.3e-06 56.6 56 44.6
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.7e-06 56.2 57 45.6
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.7e-06 56.2 59 49.2
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 8.6e-06 53.9 56 55.4


User provided reference genes

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